Mercurial > repos > pjbriggs > trimmomatic
diff README.rst @ 16:d300b1888cef draft
Uploaded bugfix version 0.38.1 for testing
author | pjbriggs |
---|---|
date | Wed, 25 Mar 2020 14:43:33 +0000 |
parents | ed7f4b065bb0 |
children | 9b273be64c25 |
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--- a/README.rst Mon Jul 08 06:35:08 2019 -0400 +++ b/README.rst Wed Mar 25 14:43:33 2020 +0000 @@ -46,9 +46,9 @@ <tool file="trimmomatic/trimmomatic.xml" /> -You will also need to install trimmomatic 0.36: +You will also need to install trimmomatic 0.38: -- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip +- http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.38.zip The tool wrapper uses the following environment variables in order to find the appropriate files: @@ -71,6 +71,8 @@ ========== ====================================================================== Version Changes ---------- ---------------------------------------------------------------------- +0.38.1 - Bug fix: add dependency on ``coreutils`` so that ``readlink -e`` is + supported across both Linux and MacOS platforms. 0.38.0 - Update to Trimmomatic 0.38. 0.36.6 - Added trimlog and log outputs; add support for ``fastqillumina`` and ``fastqsolexa`` input types @@ -117,6 +119,8 @@ support for gz compressed FastQ files. Charles Girardot (@cgirardot) and Jelle Scholtalbers (@scholtalbers) contributed additional options to ILLUMINACLIP. Matthias Bernt (@bernt-matthias) added log and trimlog output. +Nicola Soranzo (@nsoranzo) suggested using coreutils to enable cross-platform +support across Linux and MacOS. Developers ==========