Mercurial > repos > pjbriggs > trimmomatic

annotate trimmomatic_macros.xml @ 18:9b273be64c25 draft default tip

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Updated for Trimmomatic 0.39
author pjbriggs
date Thu, 02 Mar 2023 14:48:18 +0000
parents d300b1888cef
children
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b0315888eb4d Test for version which is compatible with conda dependency resolver.
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1 <macros>
b0315888eb4d Test for version which is compatible with conda dependency resolver.
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2 <!--
b0315888eb4d Test for version which is compatible with conda dependency resolver.
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3 Set the path for the trimmomatic JAR and data files
b0315888eb4d Test for version which is compatible with conda dependency resolver.
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4 Based on https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/snpsift/snpSift_macros.xml#L13
b0315888eb4d Test for version which is compatible with conda dependency resolver.
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5 -->
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d300b1888cef Uploaded bugfix version 0.38.1 for testing
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6 <token name="@CONDA_TRIMMOMATIC_JAR_PATH@">if [ -z "\$TRIMMOMATIC_JAR_PATH" ]; then export TRIMMOMATIC_JAR_PATH=\$(dirname \$(readlink -e \$(which trimmomatic))); fi</token>
d300b1888cef Uploaded bugfix version 0.38.1 for testing
pjbriggs
parents: 13
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7 <token name="@CONDA_TRIMMOMATIC_ADAPTERS_PATH@">if [ -z "\$TRIMMOMATIC_ADAPTERS_PATH" ]; then export TRIMMOMATIC_ADAPTERS_PATH=\$(dirname \$(readlink -e \$(which trimmomatic)))/adapters; fi</token>
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9b273be64c25 Updated for Trimmomatic 0.39
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8 <token name="@TOOL_VERSION@">0.39</token>
9b273be64c25 Updated for Trimmomatic 0.39
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9 <token name="@VERSION_SUFFIX@">0</token>
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b0315888eb4d Test for version which is compatible with conda dependency resolver.
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10 </macros>