# HG changeset patch
# User pjbriggs
# Date 1520584711 18000
# Node ID 4b65b5d0d08d09cc593aa2ee4ac2bedebb9f85a4
# Parent  e630b0f34130ffc2af5c00c63ebc011361ad6836
Uploaded version 1.0.3.1 (use conda to resolve dependencies)

diff -r e630b0f34130 -r 4b65b5d0d08d README.rst
--- a/README.rst	Tue Jan 23 11:14:46 2018 -0500
+++ b/README.rst	Fri Mar 09 03:38:31 2018 -0500
@@ -90,6 +90,7 @@
 ========== ======================================================================
 Version    Changes
 ---------- ----------------------------------------------------------------------
+1.0.3.1    - Fetch dependencies from conda if not otherwise satisfied
 1.0.3.0    - Update to ``RnaChipIntegrator`` version 1.0.3
 1.0.2.0    - Update to ``RnaChipIntegrator`` version 1.0.2 (fixes bug with
              zero or blank cutoff)
diff -r e630b0f34130 -r 4b65b5d0d08d rnachipintegrator_canonical_genes.xml
--- a/rnachipintegrator_canonical_genes.xml	Tue Jan 23 11:14:46 2018 -0500
+++ b/rnachipintegrator_canonical_genes.xml	Fri Mar 09 03:38:31 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="rnachipintegrator_canonical_genes" name="Analyse canonical genes against 'peak' data" version="@VERSION@.0">
+<tool id="rnachipintegrator_canonical_genes" name="Analyse canonical genes against 'peak' data" version="@VERSION@">
   <description>using RnaChipIntegrator</description>
   <macros>
     <import>rnachipintegrator_macros.xml</import>
diff -r e630b0f34130 -r 4b65b5d0d08d rnachipintegrator_macros.xml
--- a/rnachipintegrator_macros.xml	Tue Jan 23 11:14:46 2018 -0500
+++ b/rnachipintegrator_macros.xml	Fri Mar 09 03:38:31 2018 -0500
@@ -1,8 +1,8 @@
 <macros>
-  <token name="@VERSION@">1.0.3</token>
+  <token name="@VERSION@">1.0.3.1</token>
   <xml name="requirements">
     <requirements>
-      <requirement type="package" version="0.8.4">python_xlsxwriter</requirement>
+      <requirement type="package" version="2.7">python</requirement>
       <requirement type="package" version="1.0.3">rnachipintegrator</requirement>
     </requirements>
   </xml>
diff -r e630b0f34130 -r 4b65b5d0d08d rnachipintegrator_wrapper.xml
--- a/rnachipintegrator_wrapper.xml	Tue Jan 23 11:14:46 2018 -0500
+++ b/rnachipintegrator_wrapper.xml	Fri Mar 09 03:38:31 2018 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="rnachipintegrator_wrapper" name="RnaChipIntegrator" version="@VERSION@.0">
+<tool id="rnachipintegrator_wrapper" name="RnaChipIntegrator" version="@VERSION@">
   <description>Integrated analysis of 'gene' and 'peak' data</description>
   <macros>
     <import>rnachipintegrator_macros.xml</import>
diff -r e630b0f34130 -r 4b65b5d0d08d tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jan 23 11:14:46 2018 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="python_xlsxwriter" version="0.8.4">
-    <install version="1.0">
-      <actions>
-	<action type="download_by_url">https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.8.4.tar.gz</action>
-        <action type="make_directory">$INSTALL_DIR/lib/python</action>
-        <action type="shell_command">
-          export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
-          python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
-        </action>
-        <action type="set_environment">
-          <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
-          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-        </action>
-      </actions>
-    </install>
-    <readme>Installs Python module XlsxWriter 0.8.4</readme>
-  </package>
-  <package name="rnachipintegrator" version="1.0.3">
-    <install version="1.0">
-      <actions>
-	<action type="download_by_url">https://pypi.python.org/packages/2f/63/d2b930e110b74197675ab6eee21f46afbdb3931f6aa971fc2de8c2437163/RnaChipIntegrator-1.0.3.tar.gz</action>
-        <action type="shell_command">
-	  pip install --no-use-wheel --install-option "--prefix=$INSTALL_DIR" .
-	</action>
-        <action type="set_environment">
-          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-          <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
-	</action>
-      </actions>
-    </install>
-    <readme>Installs RnaChipIntegrator 1.0.3 from PyPI</readme>
-  </package>
-</tool_dependency>