Mercurial > repos > pjbriggs > pal_finder

diff pal_finder_wrapper.sh @ 11:84613d5f1713 draft

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Uploaded fix to printing read IDs with associated with 'bad' ranges.
author pjbriggs
date Mon, 24 Jul 2017 11:04:27 -0400
parents b3ca3ece8a8b
children d26fb5260c67
line wrap: on
line diff
--- a/pal_finder_wrapper.sh	Fri Jun 16 09:30:37 2017 -0400
+++ b/pal_finder_wrapper.sh	Mon Jul 24 11:04:27 2017 -0400
@@ -320,7 +320,7 @@
 
 Pal_finder generated bad ranges for the following read IDs:
 EOF
-    $(find_bad_primer_ranges Output/pr3in.txt) >&2
+    echo $(find_bad_primer_ranges Output/pr3in.txt) >&2
     cat >&2 <<EOF
 
 This error can occur when input data contains short R1 reads and has