Mercurial > repos > pjbriggs > pal_finder

comparison README.rst @ 12:d26fb5260c67 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
0.02.04.6: update to use conda to resolve dependencies.
author pjbriggs
date Thu, 15 Mar 2018 09:49:05 -0400
parents b3ca3ece8a8b
children 3f8bf1a0403b
comparison
equal deleted inserted replaced
11:84613d5f1713 12:d26fb5260c67
59 59
60 ========== ====================================================================== 60 ========== ======================================================================
61 Version Changes 61 Version Changes
62 ---------- ---------------------------------------------------------------------- 62 ---------- ----------------------------------------------------------------------
63 63
64 0.02.04.6 - Trap for errors in ``pal_finder_v0.02.04.pl`` resulting in bad 64 0.02.04.6 - Update to get dependencies using ``conda`` when installed from the
65 ranges being supplied to ``primer3_core`` for some reads via 65 toolshed (this removes the explicit dependency on Perl 5.16
66 ``PRIMER_PRODUCT_RANGE_SIZE``. 66 introduced in 0.02.04.2, as a result the outputs from the tool are
67 now non-deterministic in some cases).
67 0.02.04.5 - Update to handle large output files which can sometimes be generated 68 0.02.04.5 - Update to handle large output files which can sometimes be generated
68 by the ``pal_finder_v0.02.04.pl`` or ``pal_filter.py`` scripts (logs 69 by the ``pal_finder_v0.02.04.pl`` or ``pal_filter.py`` scripts (logs
69 of hundreds of Gb's have been observed in production): log files 70 of hundreds of Gb's have been observed in production): log files
70 longer than 500 lines are now truncated to avoid downstream problems. 71 longer than 500 lines are now truncated to avoid downstream problems.
71 0.02.04.4 - Update to the filter script (``pal_filter.py``) which removes some 72 0.02.04.4 - Update to the filter script (``pal_filter.py``) which removes some