Mercurial > repos > pjbriggs > pal_finder
comparison test-data/illuminaPE_microsats.out @ 0:1dac42bb7aab draft
First version pushed to test toolshed.
| author | pjbriggs |
|---|---|
| date | Tue, 09 Dec 2014 09:09:13 -0500 |
| parents | |
| children | 1cea7b4b838f |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:1dac42bb7aab |
|---|---|
| 1 readPairID Motifs(bases) Bases in all Motifs Possible Extended Possible Spanning Primers found (1=y,0=n) F Primer Name Forward Primer R Primer Name Reverse Primer Amplicon Motifs Number motif bases in amplicon Primers on sep reads Extend with primers Spand with primers Occurances of Forward Primer in Reads Occurances of Reverse Primer in Reads Occurances of Amplifiable Primer Pair in Reads Occurances of Amplifiable Primer Pair in PALs | |
| 2 ILLUMINA-545855_0049_FC61RLR:2:1:8044:1926#0 AT(12) 12 0 | |
| 3 ILLUMINA-545855_0049_FC61RLR:2:1:1978:1220#0 AC(12) 12 1 test_3 GCAGTAAACAAAGGCAAAGGG test_4 CCTGGGCAGAGGTGTTCC AC(12) 12 1 1 1 1 1 | |
| 4 ILLUMINA-545855_0049_FC61RLR:2:1:5879:1238#0 AT(12) 12 0 | |
| 5 ILLUMINA-545855_0049_FC61RLR:2:1:8899:1514#0 AC(12) AC(12) 24 1 test_2 TCTTTATCTAAACACATCCTGAAATACC test_1 AAACGCAATTATTTTGAGATGTCC AC(12) AC(12) 24 1 1 2 1 1 | |
| 6 ILLUMINA-545855_0049_FC61RLR:2:1:10979:1695#0 TC(14) 14 1 test_7 TTCTCCCACTATATTTTGCATTGG test_8 TCCAGACTGAAGCTACCCTGG TC(14) 14 1 1 1 1 1 | |
| 7 ILLUMINA-545855_0049_FC61RLR:2:1:5626:1554#0 AT(14) AC(16) AC(16) AT(12) 58 0 | |
| 8 ILLUMINA-545855_0049_FC61RLR:2:1:8157:1636#0 AC(12) 12 1 test_5 AAGTACAGTGGGGAGGCTGG test_6 TTTTCTACACAGCTCAAGTAGCCC AC(12) 12 1 1 1 1 1 | |
| 9 ILLUMINA-545855_0049_FC61RLR:2:1:19063:1614#0 AT(14) AT(14) AT(14) AT(14) 56 0 | |
| 10 ILLUMINA-545855_0049_FC61RLR:2:1:17449:1584#0 AC(36) 36 0 | |
| 11 ILLUMINA-545855_0049_FC61RLR:2:1:6204:1090#0 TC(12) 12 0 |