Mercurial > repos > pjbriggs > pal_finder
comparison tool_dependencies.xml @ 3:1cea7b4b838f draft
Uploaded version 0.02.04.3.
| author | pjbriggs |
|---|---|
| date | Fri, 04 Dec 2015 04:36:51 -0500 |
| parents | 288a74cd7a8d |
| children | 431849236cb9 |
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| 2:dff26850370b | 3:1cea7b4b838f |
|---|---|
| 62 </action> | 62 </action> |
| 63 </actions> | 63 </actions> |
| 64 </install> | 64 </install> |
| 65 <readme>primer3_core</readme> | 65 <readme>primer3_core</readme> |
| 66 </package> | 66 </package> |
| 67 <package name="biopython" version="1.65"> | |
| 68 <install version="1.0"> | |
| 69 <actions> | |
| 70 <action type="shell_command">pip install --install-option "--prefix=$INSTALL_DIR" https://pypi.python.org/packages/source/b/biopython/biopython-1.65.tar.gz</action> | |
| 71 <action type="set_environment"> | |
| 72 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable> | |
| 73 </action> | |
| 74 </actions> | |
| 75 </install> | |
| 76 <readme>BioPython 1.65</readme> | |
| 77 </package> | |
| 78 <package name="pandaseq" version="2.8.1"> | |
| 79 <install version="1.0"> | |
| 80 <actions> | |
| 81 <action type="download_by_url">https://github.com/neufeld/pandaseq/archive/v2.8.1.tar.gz</action> | |
| 82 <action type="shell_command">./autogen.sh</action> | |
| 83 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> | |
| 84 <action type="shell_command">make</action> | |
| 85 <action type="shell_command">make install</action> | |
| 86 <action type="set_environment"> | |
| 87 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 88 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> | |
| 89 </action> | |
| 90 </actions> | |
| 91 </install> | |
| 92 <readme>PANDASeq 2.8.1 | |
| 93 | |
| 94 PANDASEQ is a program to align Illumina reads, optionally | |
| 95 with PCR primers embedded in the sequence, and reconstruct | |
| 96 an overlapping sequence. | |
| 97 | |
| 98 https://github.com/neufeld/pandaseq | |
| 99 </readme> | |
| 100 </package> | |
| 67 </tool_dependency> | 101 </tool_dependency> |