Mercurial > repos > pjbriggs > pal_finder

annotate test-data/illuminaPE_microsats.out @ 2:dff26850370b draft

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Uploaded latest version 0.02.04.2.
author pjbriggs
date Thu, 19 Mar 2015 05:57:37 -0400
parents 1dac42bb7aab
children 1cea7b4b838f
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1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
diff changeset
1 readPairID Motifs(bases) Bases in all Motifs Possible Extended Possible Spanning Primers found (1=y,0=n) F Primer Name Forward Primer R Primer Name Reverse Primer Amplicon Motifs Number motif bases in amplicon Primers on sep reads Extend with primers Spand with primers Occurances of Forward Primer in Reads Occurances of Reverse Primer in Reads Occurances of Amplifiable Primer Pair in Reads Occurances of Amplifiable Primer Pair in PALs
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
diff changeset
2 ILLUMINA-545855_0049_FC61RLR:2:1:8044:1926#0 AT(12) 12 0
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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3 ILLUMINA-545855_0049_FC61RLR:2:1:1978:1220#0 AC(12) 12 1 test_3 GCAGTAAACAAAGGCAAAGGG test_4 CCTGGGCAGAGGTGTTCC AC(12) 12 1 1 1 1 1
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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4 ILLUMINA-545855_0049_FC61RLR:2:1:5879:1238#0 AT(12) 12 0
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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5 ILLUMINA-545855_0049_FC61RLR:2:1:8899:1514#0 AC(12) AC(12) 24 1 test_2 TCTTTATCTAAACACATCCTGAAATACC test_1 AAACGCAATTATTTTGAGATGTCC AC(12) AC(12) 24 1 1 2 1 1
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
diff changeset
6 ILLUMINA-545855_0049_FC61RLR:2:1:10979:1695#0 TC(14) 14 1 test_7 TTCTCCCACTATATTTTGCATTGG test_8 TCCAGACTGAAGCTACCCTGG TC(14) 14 1 1 1 1 1
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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7 ILLUMINA-545855_0049_FC61RLR:2:1:5626:1554#0 AT(14) AC(16) AC(16) AT(12) 58 0
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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8 ILLUMINA-545855_0049_FC61RLR:2:1:8157:1636#0 AC(12) 12 1 test_5 AAGTACAGTGGGGAGGCTGG test_6 TTTTCTACACAGCTCAAGTAGCCC AC(12) 12 1 1 1 1 1
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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9 ILLUMINA-545855_0049_FC61RLR:2:1:19063:1614#0 AT(14) AT(14) AT(14) AT(14) 56 0
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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10 ILLUMINA-545855_0049_FC61RLR:2:1:17449:1584#0 AC(36) 36 0
1dac42bb7aab First version pushed to test toolshed.
pjbriggs
parents:
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11 ILLUMINA-545855_0049_FC61RLR:2:1:6204:1090#0 TC(12) 12 0