Mercurial > repos > pjbriggs > macs21
comparison install_tool_deps.sh @ 23:c7646ff9b5c9 draft default tip
planemo upload commit a2f39c10087e77bde5b5db5d04305f72b8eb2af2
| author | pjbriggs |
|---|---|
| date | Tue, 27 Jun 2023 07:37:07 +0000 |
| parents | |
| children |
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| 22:dfb939015935 | 23:c7646ff9b5c9 |
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| 1 #!/bin/bash | |
| 2 # | |
| 3 # Install the tool dependencies for MACS21 for testing from command line | |
| 4 # | |
| 5 # Installer functions | |
| 6 . $(dirname $0)/../../local_dependency_installers/numpy.sh | |
| 7 . $(dirname $0)/../../local_dependency_installers/macs2.sh | |
| 8 . $(dirname $0)/../../local_dependency_installers/ucsc_tools.sh | |
| 9 # | |
| 10 # Installation directory | |
| 11 TOP_DIR=$1 | |
| 12 if [ -z "$TOP_DIR" ] ; then | |
| 13 echo Usage: $(basename $0) DIR | |
| 14 exit | |
| 15 fi | |
| 16 if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then | |
| 17 TOP_DIR=$(pwd)/$TOP_DIR | |
| 18 fi | |
| 19 if [ ! -d "$TOP_DIR" ] ; then | |
| 20 mkdir -p $TOP_DIR | |
| 21 fi | |
| 22 # Numpy 1.9 | |
| 23 install_numpy_1_9 $TOP_DIR | |
| 24 # MACS21 | |
| 25 . $TOP_DIR/numpy/1.9/env.sh # needs Numpy 1.9 | |
| 26 install_macs2_2_1_0_20140616 $TOP_DIR | |
| 27 # UCSC tool subset | |
| 28 install_ucsc_tools_for_macs21_2_0 $TOP_DIR | |
| 29 ## | |
| 30 # |