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comparison tool_dependencies.xml @ 3:881a48588832 draft

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Updated tool_dependencies.xml.
author pjbriggs
date Mon, 20 Apr 2015 11:08:43 -0400
parents 15889783e759
children a881c5b7162c
comparison
equal deleted inserted replaced
2:15889783e759 3:881a48588832
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!-- Dependencies from local toolshed
4 <package name="numpy" version="1.9">
5 <repository name="package_numpy_1_9" prior_installation_required="True" owner="pjbriggs" />
6 </package>
7 -->
8 <!-- Dependencies from main/test toolsheds --> 3 <!-- Dependencies from main/test toolsheds -->
9 <package name="numpy" version="1.9"> 4 <package name="numpy" version="1.9">
10 <repository changeset_revision="266529386609" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 5 <repository changeset_revision="266529386609" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 6 </package>
12 <!-- Subset of UCSC tools --> 7 <!-- Subset of UCSC tools -->
40 <!-- MACS 2.1.0 --> 35 <!-- MACS 2.1.0 -->
41 <package name="macs2" version="2.1.0.20140616"> 36 <package name="macs2" version="2.1.0.20140616">
42 <install version="1.0"> 37 <install version="1.0">
43 <actions> 38 <actions>
44 <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.1.0.20140616.tar.gz</action> 39 <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.1.0.20140616.tar.gz</action>
45 <!-- Install environment for local toolshed
46 <repository name="package_numpy_1_9" owner="pjbriggs">
47 <package name="python_numpy" version="1.9" />
48 </repository>
49 </action>
50 -->
51 <!-- Install environment for main & test toolsheds --> 40 <!-- Install environment for main & test toolsheds -->
52 <action type="set_environment_for_install"> 41 <action type="set_environment_for_install">
53 <repository changeset_revision="266529386609" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 42 <repository changeset_revision="266529386609" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
54 <package name="numpy" version="1.9" /> 43 <package name="numpy" version="1.9" />
55 </repository> 44 </repository>
56 </action> 45 </action>
57 --&gt;
58 <action type="make_directory">$INSTALL_DIR/lib/python</action> 46 <action type="make_directory">$INSTALL_DIR/lib/python</action>
59 <action type="shell_command"> 47 <action type="shell_command">
60 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 48 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
61 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 49 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
62 </action> 50 </action>