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comparison macs21_wrapper.xml @ 18:4e85d68a2347 draft

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Version 2.1.0-6: add sorting step in bigWig generation, and explicitly terminate tool on error from MACS2.
author pjbriggs
date Wed, 22 Mar 2017 11:24:52 -0400
parents f346287fe52c
children 51303ba3fbbe
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17:f346287fe52c 18:4e85d68a2347
1 <tool id="macs2_1_peakcalling" name="MACS2.1.0" version="2.1.0-5"> 1 <tool id="macs2_1_peakcalling" name="MACS2.1.0" version="2.1.0-6">
2 <description>Model-based Analysis of ChIP-Seq: peak calling</description> 2 <description>Model-based Analysis of ChIP-Seq: peak calling</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.7">python</requirement> 4 <requirement type="package" version="2.7">python</requirement>
5 <requirement type="package" version="1.9">numpy</requirement> 5 <requirement type="package" version="1.9">numpy</requirement>
6 <requirement type="package" version="2.1.0.20140616">macs2</requirement> 6 <requirement type="package" version="2.1.0.20140616">macs2</requirement>
7 <requirement type="package" version="3.1.2">R</requirement> 7 <requirement type="package" version="3.1.2">R</requirement>
8 <requirement type="package" version="1.0">ucsc_tools_for_macs21</requirement> 8 <requirement type="package" version="2.0">ucsc_tools_for_macs21</requirement>
9 </requirements> 9 </requirements>
10 <version_command>macs2 --version</version_command> 10 <version_command>macs2 --version</version_command>
11 <command interpreter="python"> 11 <command interpreter="python">
12 macs21_wrapper.py callpeak 12 macs21_wrapper.py callpeak
13 ## 13 ##