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comparison tool_dependencies.xml @ 10:2d4ef45ec089 draft

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Uploaded modified tool_dependencies.xml to see if that helps with setting the installation env for MACS 2.1.0 (which needs Numpy).
author pjbriggs
date Mon, 15 Jun 2015 06:56:07 -0400
parents 7aecd0908b3c
children e164b8e164a7
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9:7aecd0908b3c 10:2d4ef45ec089
40 </package> 40 </package>
41 <!-- MACS 2.1.0 --> 41 <!-- MACS 2.1.0 -->
42 <package name="macs2" version="2.1.0.20140616"> 42 <package name="macs2" version="2.1.0.20140616">
43 <install version="1.0"> 43 <install version="1.0">
44 <actions> 44 <actions>
45 <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.1.0.20140616.tar.gz</action>
46 <!-- Install environment for main & test toolsheds --> 45 <!-- Install environment for main & test toolsheds -->
47 <action type="set_environment_for_install"> 46 <action type="set_environment_for_install">
48 <repository changeset_revision="43cb426cb05d" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 47 <repository changeset_revision="43cb426cb05d" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
49 <package name="numpy" version="1.9" /> 48 <package name="numpy" version="1.9" />
50 </repository> 49 </repository>
51 </action> 50 </action>
51 <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.1.0.20140616.tar.gz</action>
52 <action type="make_directory">$INSTALL_DIR/lib/python</action> 52 <action type="make_directory">$INSTALL_DIR/lib/python</action>
53 <action type="shell_command"> 53 <action type="shell_command">
54 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 54 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
55 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 55 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
56 </action> 56 </action>