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22
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1 \#peaks\ file
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2 \#\ This\ file\ is\ generated\ by\ MACS\ version\ 2\.1\.2
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3 \#\ Command\ line\:\ callpeak\ \-t\ .*\.dat \-c\ .*\.dat\ \-\-format\=BED\ \-\-name\=test\_MACS2\.1\.2\ \-\-bw\=300\ \-\-gsize\=775000000\.0\ \-\-nomodel\ \-\-extsize\=243\ \-\-qvalue\=0\.05\ \-B\ \-\-SPMR\ \-\-mfold\ 5\ 50\ \-\-keep\-dup\ 1
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4 \#\ ARGUMENTS\ LIST\:
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5 \#\ name\ \=\ test\_MACS2\.1\.2
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6 \#\ format\ \=\ BED
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7 \#\ ChIP\-seq\ file\ \=\ \[\'.*\'\]
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8 \#\ control\ file\ \=\ \[\'.*\'\]
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9 \#\ effective\ genome\ size\ \=\ 7\.75e\+08
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10 \#\ band\ width\ \=\ 300
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11 \#\ model\ fold\ \=\ \[5\,\ 50\]
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12 \#\ qvalue\ cutoff\ \=\ 5\.00e\-02
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13 \#\ The\ maximum\ gap\ between\ significant\ sites\ is\ assigned\ as\ the\ read\ length\/tag\ size\.
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14 \#\ The\ minimum\ length\ of\ peaks\ is\ assigned\ as\ the\ predicted\ fragment\ length\ \"d\"\.
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15 \#\ Larger\ dataset\ will\ be\ scaled\ towards\ smaller\ dataset\.
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16 \#\ Range\ for\ calculating\ regional\ lambda\ is\:\ 1000\ bps\ and\ 10000\ bps
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17 \#\ Broad\ region\ calling\ is\ off
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18 \#\ Paired\-End\ mode\ is\ off
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19 \#\ MACS\ will\ save\ fragment\ pileup\ signal\ per\ million\ reads
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20
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21 \#\ tag\ size\ is\ determined\ as\ 50\ bps
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22 \#\ total\ tags\ in\ treatment\:\ 50
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23 \#\ tags\ after\ filtering\ in\ treatment\:\ 50
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24 \#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ treatment\ \=\ 1
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25 \#\ Redundant\ rate\ in\ treatment\:\ 0\.00
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26 \#\ total\ tags\ in\ control\:\ 50
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27 \#\ tags\ after\ filtering\ in\ control\:\ 50
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28 \#\ maximum\ duplicate\ tags\ at\ the\ same\ position\ in\ control\ \=\ 1
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29 \#\ Redundant\ rate\ in\ control\:\ 0\.00
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30 \#\ d\ \=\ 243
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31 \#chr\ start\ end\ length\ abs\_summit\ pileup\ \-log10\(pvalue\)\ fold\_enrichment\ \-log10\(qvalue\)\ name
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32 chr26\ 4118914\ 4119282\ 369\ 4119130\ 9\.00\ 9\.13132\ 6\.31632\ 2\.51561\ test\_MACS2\.1\.2\_peak\_2
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