Mercurial > repos > pjbriggs > data_manager_mothur_toolsuite
comparison README.markdown @ 0:b90e0f2bf4b1 draft default tip
Initial version.
| author | pjbriggs |
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| date | Tue, 18 Nov 2014 09:57:33 -0500 |
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| -1:000000000000 | 0:b90e0f2bf4b1 |
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| 1 data_manager_mothur_reference_data | |
| 2 ================================== | |
| 3 | |
| 4 Data manager to install reference data for Mothur toolsuite. | |
| 5 | |
| 6 Specifically it can download data directly from the Mothur website, or | |
| 7 import files and directories on the server filesystem. | |
| 8 | |
| 9 This tool needs a version of the mothur toolsuite that has been switched to | |
| 10 use data tables, and should be installed into a Galaxy instance from a | |
| 11 toolshed (you can use the `package_mothur_data_manager.sh` script to create | |
| 12 a .tgz file suitable for upload to a toolshed). | |
| 13 | |
| 14 Note that Galaxy's support for data managers is generally still quite limited, | |
| 15 so it is possible that this tool may produce unexpected results. It also only | |
| 16 possible to add entries to the data tables i.e. edit or delete functionality | |
| 17 is not available via the tool. | |
| 18 | |
| 19 Changes | |
| 20 ------- | |
| 21 | |
| 22 0.1.1: extended to allow import of multiple files from server | |
| 23 filesystem in a single operation. | |
| 24 | |
| 25 0.1.0: added function to import single file from server filesystem. | |
| 26 | |
| 27 0.0.1: initial version with download from Mothur website option. |