Mercurial > repos > pjbriggs > data_manager_mothur_toolsuite

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Initial version.
author pjbriggs
date Tue, 18 Nov 2014 09:57:33 -0500
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1 data_manager_mothur_reference_data
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2 ==================================
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3
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4 Data manager to install reference data for Mothur toolsuite.
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5
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6 Specifically it can download data directly from the Mothur website, or
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7 import files and directories on the server filesystem.
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8
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9 This tool needs a version of the mothur toolsuite that has been switched to
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10 use data tables, and should be installed into a Galaxy instance from a
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11 toolshed (you can use the `package_mothur_data_manager.sh` script to create
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12 a .tgz file suitable for upload to a toolshed).
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13
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14 Note that Galaxy's support for data managers is generally still quite limited,
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15 so it is possible that this tool may produce unexpected results. It also only
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16 possible to add entries to the data tables i.e. edit or delete functionality
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17 is not available via the tool.
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18
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19 Changes
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20 -------
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21
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22 0.1.1: extended to allow import of multiple files from server
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23 filesystem in a single operation.
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24
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25 0.1.0: added function to import single file from server filesystem.
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26
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27 0.0.1: initial version with download from Mothur website option.