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comparison tool_dependencies.xml @ 4:4e2883bb058d draft

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Synchronise version with one on main toolshed (version of 30/06/2015)
author pjbriggs
date Wed, 10 Aug 2016 11:04:42 -0400
parents 695d61decd06
children 55ed5e1b7a07
comparison
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3:82df5af2995f 4:4e2883bb058d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!-- Dependencies from main/test toolsheds --> 3 <!-- Local version of R 3.1.2 dependency -->
4 <package name="R" version="3.1.2"> 4 <package name="R" version="3.1.2">
5 <repository changeset_revision="41f43a2064ba" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 5 <install version="1.0">
6 <actions>
7 <action type="download_by_url">http://cran.r-project.org/src/base/R-3/R-3.1.2.tar.gz</action>
8 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
9 <action type="make_install" />
10 <action type="set_environment">
11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
12 </action>
13 </actions>
14 </install>
6 </package> 15 </package>
7 <!-- Python mysqldb package --> 16 <!-- Python mysqldb package -->
8 <package name="python_mysqldb" version="1.2.5"> 17 <package name="python_mysqldb" version="1.2.5">
9 <install version="1.0"> 18 <install version="1.0">
10 <actions> 19 <actions>
81 90
82 Cistrome data files and documentation can be found at 91 Cistrome data files and documentation can be found at
83 http://liulab.dfci.harvard.edu/CEAS/index.html 92 http://liulab.dfci.harvard.edu/CEAS/index.html
84 </readme> 93 </readme>
85 </package> 94 </package>
95 <!-- fetchChromSize from UCSC tools -->
96 <package name="ucsc_fetchChromSizes" version="1.0">
97 <install version="1.0">
98 <actions>
99 <action type="download_binary">
100 <url_template architecture="x86_64" os="linux">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</url_template>
101 </action>
102 <action type="chmod">
103 <file mode="755">$INSTALL_DIR/fetchChromSizes</file>
104 </action>
105 <action type="set_environment">
106 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
107 </action>
108 </actions>
109 </install>
110 <readme>Installs the binary executable for the fetchChromSizes utility
111 from UCSC tools
112 </readme>
113 </package>
86 </tool_dependency> 114 </tool_dependency>