# HG changeset patch
# User pjbriggs
# Date 1530624684 14400
# Node ID 52052235644b1101472876bec3955baafda381dd
# Parent  877d53e2d963d7d7713202c7bcedccb48f766cec
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit f0ee1ad05711ce1499c5e219373cca74d0aafeaf-dirty

diff -r 877d53e2d963 -r 52052235644b amplicon_analysis_pipeline.xml
--- a/amplicon_analysis_pipeline.xml	Tue Jul 03 08:22:44 2018 -0400
+++ b/amplicon_analysis_pipeline.xml	Tue Jul 03 09:31:24 2018 -0400
@@ -16,6 +16,7 @@
     <requirement type="package" version="2.2">rdp_classifier</requirement>
     <requirement type="package" version="3.2.1">R</requirement>
     <requirement type="package" version="1.1.3">vsearch</requirement>
+    <requirement type="package" version="1.2.22">uclust-qiime</requirement>
     <!-- microbiomeutil not available in bioconda -->
     <requirement type="package" version="2010-04-29">microbiomeutil</requirement>
     <!-- fastq_number not available in bioconda -->
diff -r 877d53e2d963 -r 52052235644b tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jul 03 08:22:44 2018 -0400
+++ b/tool_dependencies.xml	Tue Jul 03 09:31:24 2018 -0400
@@ -34,6 +34,23 @@
 	</actions>
       </install>
   </package>
+  <package name="uclust-qiime" version="1.2.22">
+    <install version="1.0">
+      <actions>
+	<action type="download_by_url">http://drive5.com/uclust/uclustq1.2.22_i86linux64</action>
+	<action rename_to="uclust" type="move_file">
+	  <source>http://drive5.com/uclust/uclustq1.2.22_i86linux64</source>
+	  <destination>$INSTALL_DIR/bin</destination>
+	</action>
+	<action type="chmod">
+	  <file mode="755">$INSTALL_DIR/bin/uclust</file>
+	</action>
+	<action type="set_environment">
+	    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+	</action>
+      </actions>
+    </install>
+  </package>
   <package name="R" version="3.2.1">
     <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>