Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
diff README.rst @ 5:bbfc9638ba84 draft
First version with (partial) bioconda deps.
| author | pjbriggs |
|---|---|
| date | Wed, 13 Jun 2018 08:39:26 -0400 |
| parents | 013bf1e2cc8f |
| children | b5e43dfe07ac |
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--- a/README.rst Wed Jun 13 07:43:57 2018 -0400 +++ b/README.rst Wed Jun 13 08:39:26 2018 -0400 @@ -194,19 +194,16 @@ - bioawk 1.0 - fastqc 0.11.3 - R 3.2.0 - -Some dependencies are available but with the "wrong" versions: - - - spades (need 3.5.0) - - qiime (need 1.8.0) - - blast (need 2.2.26) - - vsearch (need 1.1.3) + - spades 3.5.0 + - qiime 1.8.0 + - blast-legacy 2.2.26 + - vsearch 1.1.3 + - fasta-splitter 0.2.4 + - rdp_classifier 2.2 The following dependencies are currently unavailable: - fasta_number (need 02jun2015) - - fasta-splitter (need 0.2.4) - - rdp_classifier (need 2.2) - microbiomeutil (need r20110519) (NB usearch 6.1.544 and 8.0.1623 are special cases which must be @@ -218,6 +215,7 @@ ========== ====================================================================== Version Changes ---------- ---------------------------------------------------------------------- +1.2.2.1 Update to get dependencies from bioconda 1.2.2.0 Updated to Amplicon_Analysis_Pipeline version 1.2.2 (removes jackknifed analysis which is not captured by Galaxy tool) 1.2.1.0 Updated to Amplicon_Analysis_Pipeline version 1.2.1 (adds