Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison amplicon_analysis_pipeline.py @ 26:f0917c340f13 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 34034189622f4cf14edd12a4de43739c37b50730-dirty
author pjbriggs
date Thu, 30 Aug 2018 08:41:11 -0400
parents fd65832d1074
children b5e43dfe07ac
comparison
equal deleted inserted replaced
25:fd65832d1074 26:f0917c340f13
236 print "-- set QIIME_CONFIG_FP: %s" % os.environ["QIIME_CONFIG_FP"] 236 print "-- set QIIME_CONFIG_FP: %s" % os.environ["QIIME_CONFIG_FP"]
237 # Check for fasta_number.py 237 # Check for fasta_number.py
238 fasta_number = find_executable("fasta_number.py") 238 fasta_number = find_executable("fasta_number.py")
239 if not fasta_number: 239 if not fasta_number:
240 # Make a link to relabel_fasta.py 240 # Make a link to relabel_fasta.py
241 relabel_fasta_path = os.path.join(os.path.realpath(__file__), 241 relabel_fasta_path = os.path.join(os.path.dirname(__file__),
242 "relabel_fasta.py") 242 "relabel_fasta.py")
243 fasta_number_path = os.path.join(os.path.abspath("bin"), 243 fasta_number_path = os.path.join(os.path.abspath("bin"),
244 "fasta_number.py") 244 "fasta_number.py")
245 os.symlink(relabel_fasta_path,fasta_number_path) 245 os.symlink(relabel_fasta_path,fasta_number_path)
246 print "-- linked %s to %s" % (relabel_fasta_path, 246 print "-- linked %s to %s" % (relabel_fasta_path,