Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison amplicon_analysis_pipeline.py @ 17:e1ba19551395 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit af3afa7bd2c2441074879938cd93d9965908bbc7-dirty
author pjbriggs
date Tue, 03 Jul 2018 07:20:12 -0400
parents 4bd582d23d4e
children 877d53e2d963
comparison
equal deleted inserted replaced
16:4bd582d23d4e 17:e1ba19551395
203 os.path.join(os.path.dirname(rdp_classifier), 203 os.path.join(os.path.dirname(rdp_classifier),
204 "..", 204 "..",
205 "share", 205 "share",
206 "rdp_classifier", 206 "rdp_classifier",
207 "rdp_classifier.jar")) 207 "rdp_classifier.jar"))
208 if rdp_classifier and os.path.exists(os.path.join): 208 if rdp_classifier and os.path.exists(rdp_classifier):
209 os.environ["RDP_JAR_PATH"] = rdp_classifier 209 os.environ["RDP_JAR_PATH"] = rdp_classifier
210 print "-- set RDP_JAR_PATH: %s" % os.environ["RDP_JAR_PATH"] 210 print "-- set RDP_JAR_PATH: %s" % os.environ["RDP_JAR_PATH"]
211 else: 211 else:
212 sys.stderr.write("Missing 'rdp_classifier.jar'\n") 212 sys.stderr.write("Missing 'rdp_classifier.jar'\n")
213 213