Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison tool_dependencies.xml @ 36:c9ed9443f293 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 601f7d1e21b25c583cc6e1a563029bab3f226921-dirty
author pjbriggs
date Tue, 16 Oct 2018 09:48:37 -0400
parents 44f5057fc878
children d19fca1c009c
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35:44f5057fc878 36:c9ed9443f293
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="amplicon_analysis_pipeline-all" version="1.2.3"> 3 <package name="amplicon_analysis_pipeline-all" version="1.2.3">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/88289d6e8376bc94eb1a86391c3de9a81b1aa8a0/install_amplicon_analysis.sh</action> 6 <action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/5fe08ecabf682265778d6307fa63a44c768d251c/install_amplicon_analysis.sh</action>
7 <!--
8 <action type="chmod">
9 <file mode="755">./install_amplicon_analysis.sh</file>
10 </action>
11 -->
12 <action type="shell_command"> 7 <action type="shell_command">
13 bash ./install_amplicon_analysis.sh $INSTALL_DIR 8 sh ./install_amplicon_analysis.sh $INSTALL_DIR
14 </action> 9 </action>
15 <action type="set_environment"> 10 <action type="set_environment">
16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable> 11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable>
17 </action> 12 </action>
18 </actions> 13 </actions>