Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison amplicon_analysis_pipeline.xml @ 33:c4cde1f435f4 draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 283f59740e90fa714c305007af40041ce39a74aa-dirty
author pjbriggs
date Wed, 10 Oct 2018 10:57:42 -0400
parents d94f2d7e8574
children 3512b135ecb0
comparison
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32:d94f2d7e8574 33:c4cde1f435f4
12 <requirement type="package" version="1.0">bioawk</requirement> 12 <requirement type="package" version="1.0">bioawk</requirement>
13 <requirement type="package" version="2.8.1">pandaseq</requirement> 13 <requirement type="package" version="2.8.1">pandaseq</requirement>
14 <requirement type="package" version="3.5.0">spades</requirement> 14 <requirement type="package" version="3.5.0">spades</requirement>
15 <requirement type="package" version="0.11.3">fastqc</requirement> 15 <requirement type="package" version="0.11.3">fastqc</requirement>
16 <requirement type="package" version="1.8.0">qiime</requirement> 16 <requirement type="package" version="1.8.0">qiime</requirement>
17 <requirement type="package" version="1.0">libgfortran</requirement>
17 <requirement type="package" version="2.2.26">blast-legacy</requirement> 18 <requirement type="package" version="2.2.26">blast-legacy</requirement>
18 <requirement type="package" version="0.2.4">fasta-splitter</requirement> 19 <requirement type="package" version="0.2.4">fasta-splitter</requirement>
19 <requirement type="package" version="2.2">rdp_classifier</requirement> 20 <requirement type="package" version="2.2">rdp_classifier</requirement>
20 <requirement type="package" version="1.1.3">vsearch</requirement> 21 <requirement type="package" version="1.1.3">vsearch</requirement>
21 <!-- explicitly specify libgfortran=1.0 otherwise qiime is broken -->
22 <requirement type="package" version="1.0">libgfortran</requirement>
23 <!-- toolshed dependencies --> 22 <!-- toolshed dependencies -->
24 <requirement type="package" version="3.2.1">R</requirement> 23 <requirement type="package" version="3.2.1">R</requirement>
25 </requirements> 24 </requirements>
26 <stdio> 25 <stdio>
27 <exit_code range="1:" /> 26 <exit_code range="1:" />