Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

comparison amplicon_analysis_pipeline.xml @ 27:b5e43dfe07ac draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e4cd2df591ac5b9da5a1731e81f921313ed9e979
author pjbriggs
date Fri, 28 Sep 2018 11:28:17 -0400
parents fe354f5dd0ee
children b195d76c70e1
comparison
equal deleted inserted replaced
26:f0917c340f13 27:b5e43dfe07ac
1 <tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.2.1"> 1 <tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.3.0">
2 <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description> 2 <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description>
3 <requirements> 3 <requirements>
4 <!-- non-bioconda dependencies --> 4 <!-- non-bioconda dependencies -->
5 <requirement type="package" version="1.2.2">amplicon_analysis_pipeline</requirement> 5 <requirement type="package" version="1.2.3">amplicon_analysis_pipeline</requirement>
6 <requirement type="package" version="2010-04-29">microbiomeutil-chimeraslayer</requirement> 6 <requirement type="package" version="2010-04-29">microbiomeutil-chimeraslayer</requirement>
7 <requirement type="package" version="1.2.22">uclust-qiime</requirement> 7 <requirement type="package" version="1.2.22">uclust-qiime</requirement>
8 <!-- bioconda dependencies --> 8 <!-- bioconda dependencies -->
9 <requirement type="package" version="2.7">python</requirement> 9 <requirement type="package" version="2.7">python</requirement>
10 <requirement type="package" version="1.11">cutadapt</requirement> 10 <requirement type="package" version="1.11">cutadapt</requirement>
16 <requirement type="package" version="1.8.0">qiime</requirement> 16 <requirement type="package" version="1.8.0">qiime</requirement>
17 <requirement type="package" version="2.2.26">blast-legacy</requirement> 17 <requirement type="package" version="2.2.26">blast-legacy</requirement>
18 <requirement type="package" version="0.2.4">fasta-splitter</requirement> 18 <requirement type="package" version="0.2.4">fasta-splitter</requirement>
19 <requirement type="package" version="2.2">rdp_classifier</requirement> 19 <requirement type="package" version="2.2">rdp_classifier</requirement>
20 <requirement type="package" version="1.1.3">vsearch</requirement> 20 <requirement type="package" version="1.1.3">vsearch</requirement>
21 <!-- toolshed dependencies -->
21 <requirement type="package" version="3.2.1">R</requirement> 22 <requirement type="package" version="3.2.1">R</requirement>
22 </requirements> 23 </requirements>
23 <stdio> 24 <stdio>
24 <exit_code range="1:" /> 25 <exit_code range="1:" />
25 </stdio> 26 </stdio>