Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
comparison install_amplicon_analysis-1.3.6.sh @ 51:5cbc70d1c2af draft
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit d84c32edb10649e0be9109108d85b0055ae11185
| author | pjbriggs |
|---|---|
| date | Thu, 19 Dec 2019 11:47:06 +0000 |
| parents | dac038bd896d |
| children |
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| 50:dac038bd896d | 51:5cbc70d1c2af |
|---|---|
| 350 echo "failed" | 350 echo "failed" |
| 351 fail "rdp_classifier.jar not found" | 351 fail "rdp_classifier.jar not found" |
| 352 else | 352 else |
| 353 mkdir -p ${TOP_DIR}/share/rdp_classifier | 353 mkdir -p ${TOP_DIR}/share/rdp_classifier |
| 354 ln -s ${ENV_DIR}/share/rdp_classifier/rdp_classifier.jar ${TOP_DIR}/share/rdp_classifier/${rdp_classifier_jar} | 354 ln -s ${ENV_DIR}/share/rdp_classifier/rdp_classifier.jar ${TOP_DIR}/share/rdp_classifier/${rdp_classifier_jar} |
| 355 echo "ok" | 355 echo "ok" |
| 356 fi | 356 fi |
| 357 # qiime_config | 357 # qiime_config |
| 358 echo -n "Setting up qiime_config..." | 358 echo -n "Setting up qiime_config..." |
| 359 if [ -e ${TOP_DIR}/qiime/qiime_config ] ; then | 359 if [ -e ${TOP_DIR}/qiime/qiime_config ] ; then |
| 360 echo "already exists" | 360 echo "already exists" |