Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
comparison amplicon_analysis_pipeline.py @ 47:1bc0077b2c91 draft
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 06b2cc0d518a6a4d77b865b6567e0bc6a2fb26df-dirty
| author | pjbriggs |
|---|---|
| date | Tue, 17 Dec 2019 09:12:13 +0000 |
| parents | 098ad1dd7760 |
| children | 04e71fda5b9c |
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| 46:8d5fe964f61f | 47:1bc0077b2c91 |
|---|---|
| 315 "Error_rate_plots")) | 315 "Error_rate_plots")) |
| 316 error_rate_plot_pdfs = [os.path.basename(pdf) | 316 error_rate_plot_pdfs = [os.path.basename(pdf) |
| 317 for pdf in | 317 for pdf in |
| 318 sorted(glob.glob( | 318 sorted(glob.glob( |
| 319 os.path.join(error_rate_plots_dir,"*.pdf")))] | 319 os.path.join(error_rate_plots_dir,"*.pdf")))] |
| 320 with open("error_rate_plots.html","w") as error_rate_plots_out: | 320 error_rate_plots_html = os.path.join(error_rate_plots_dir, |
| 321 "error_rate_plots.html") | |
| 322 with open(error_rate_plots_html,"w") as error_rate_plots_out: | |
| 321 error_rate_plots_out.write("""<html> | 323 error_rate_plots_out.write("""<html> |
| 322 <head> | 324 <head> |
| 323 <title>Amplicon analysis pipeline: DADA2 Error Rate Plots</title> | 325 <title>Amplicon analysis pipeline: DADA2 Error Rate Plots</title> |
| 324 <head> | 326 <head> |
| 325 <body> | 327 <body> |