# HG changeset patch # User pimarin # Date 1652866598 0 # Node ID 62c6402dd50d0350612216e010901409c76e36fb # Parent 512dc05a0e5ab21566d254b7df11bd04976d99b7 "planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077" diff -r 512dc05a0e5a -r 62c6402dd50d mylog.txt --- a/mylog.txt Wed May 18 09:28:48 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,30 +0,0 @@ - -=-= /home/pierre/anaconda3/envs/rcf/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martí =-= - -[90mLoading NCBI nodes...[0m[92m OK! [0m -[90mLoading NCBI names...[0m[92m OK! [0m -[90mBuilding dict of parent to children taxa...[0m[92m OK! [0m -[90m -Please, wait, processing files in parallel... -[0m -[90mLoading output file test-data/kraken_test/kraken.out... [0m[92mOK! -[0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] -[0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) -[0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) -[0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 -[90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 -[90m Read length: min = [0m198 nt,[90m max = [0m602 nt,[90m avr = [0m533 nt -[90m TaxIds: by classifier = [0m13[90m, by filter = [0m13 -[90mBuilding from raw data with mintaxa = [0m2[90m ... -[0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m - Info:[0m 65 [90madditional seqs discarded ([0m65.657% [90mof accepted) -[0m[93m - Warning![0m 9 orphan taxids[90m (rerun with --debug for details) -[0mtest-data/kraken_test/kraken[94m sample [0m[92mOK! -[0m[90mLoad elapsed time: [0m0.00243[90m sec -[0m -[90m -Building the taxonomy multiple tree... [0m[92mOK![0m -[90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m -[90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m -[90mTotal elapsed time:[0m 00:00:00 diff -r 512dc05a0e5a -r 62c6402dd50d output.rcf.data.csv --- a/output.rcf.data.csv Wed May 18 09:28:48 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ -Samples,test-data/kraken_test/kraken,test-data/kraken_test/kraken,test-data/kraken_test/kraken,Details,Details -Stats,count,unassigned,score,Rank,Name -Id,,,,, -1,34,0,26.826023135133102,no_rank,root -2,34,0,26.826023135133102,superkingdom,Bacteria -1224,34,0,26.826023135133102,phylum,Proteobacteria -1236,34,0,26.826023135133102,class,Gammaproteobacteria -91347,34,0,26.826023135133102,order,Unnamed -543,34,9,26.826023135133102,family,Enterobacteriaceae -547,25,25,31.582057972392526,genus,Enterobacter diff -r 512dc05a0e5a -r 62c6402dd50d output.rcf.html --- a/output.rcf.html Wed May 18 09:28:48 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6581 +0,0 @@ - - \ No newline at end of file diff -r 512dc05a0e5a -r 62c6402dd50d output.rcf.stat.csv --- a/output.rcf.stat.csv Wed May 18 09:28:48 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,16 +0,0 @@ -,test-data/kraken_test/kraken -Seqs. read,99.0 -Seqs. unclass.,0.0 -Seqs. class.,99.0 -Seqs. filtered,99.0 -Score min,36.0 -Score mean,99.94949494949495 -Score max,347.0 -Length min,198.0 -Length mean,533.0 -Length max,602.0 -Total nt read,52814.0 -TIDs class.,13.0 -TIDs filtered,13.0 -TIDs folded,2.0 -Score limit,