Mercurial > repos > pimarin > recentrifuge
comparison test-data/kraken_test/test1_csv.log @ 4:512dc05a0e5a draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 0bff76499478da0f47e93e02542414d6a2aa8077"
| author | pimarin |
|---|---|
| date | Wed, 18 May 2022 09:28:48 +0000 |
| parents | e5474449c35d |
| children |
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| 3:2890083b1a84 | 4:512dc05a0e5a |
|---|---|
| 1 | 1 |
| 2 =-= /home/pierre/anaconda3/envs/__recentrifuge@1.8.1/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= | 2 =-= /home/pierre/anaconda3/envs/rcf/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= |
| 3 | 3 |
| 4 [90mLoading NCBI nodes...[0m[92m OK! [0m | 4 [90mLoading NCBI nodes...[0m[92m OK! [0m |
| 5 [90mLoading NCBI names...[0m[92m OK! [0m | 5 [90mLoading NCBI names...[0m[92m OK! [0m |
| 6 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m | 6 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
| 7 [90m | 7 [90m |
| 8 Please, wait, processing files in parallel... | 8 Please, wait, processing files in parallel... |
| 9 [0m | 9 [0m |
| 10 [90mLoading output file /tmp/tmpx0jnr7cr/files/4/d/3/dataset_4d340be5-1b4f-4ffe-9257-248066878896.dat... [0m[92mOK! | 10 [90mLoading output file kraken_test/kraken.out... [0m[92mOK! |
| 11 [0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] | 11 [0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] |
| 12 [0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) | 12 [0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) |
| 13 [0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) | 13 [0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) |
| 14 [0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 | 14 [0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 |
| 15 [90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 | 15 [90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 |
| 18 [90mBuilding from raw data with mintaxa = [0m2[90m ... | 18 [90mBuilding from raw data with mintaxa = [0m2[90m ... |
| 19 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m | 19 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
| 20 Info:[0m 65 [90madditional seqs discarded ([0m65.657% [90mof accepted) | 20 Info:[0m 65 [90madditional seqs discarded ([0m65.657% [90mof accepted) |
| 21 [0m[93m | 21 [0m[93m |
| 22 Warning![0m 9 orphan taxids[90m (rerun with --debug for details) | 22 Warning![0m 9 orphan taxids[90m (rerun with --debug for details) |
| 23 [0m/tmp/tmpx0jnr7cr/files/4/d/3/dataset_4d340be5-1b4f-4ffe-9257-248066878896[94m sample [0m[92mOK! | 23 [0mkraken_test/kraken[94m sample [0m[92mOK! |
| 24 [0m[90mLoad elapsed time: [0m0.00394[90m sec | 24 [0m[90mLoad elapsed time: [0m0.00266[90m sec |
| 25 [0m | 25 [0m |
| 26 [90m | 26 [90m |
| 27 Building the taxonomy multiple tree... [0m[92mOK![0m | 27 Building the taxonomy multiple tree... [0m[92mOK![0m |
| 28 [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m | 28 [90mGenerating interactive plot ([0m[95moutput.rcf.html[0m[90m)... [0m[92mOK![0m |
| 29 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m | 29 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m |