Mercurial > repos > pimarin > plasmidfinder

annotate test-data/test_3/Hit_in_genome_seq_test3.fsa @ 2:b90300f38c54 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84-dirty
author pimarin
date Wed, 15 Feb 2023 08:41:37 +0000
parents 7c8c8a816114
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
1 >rep2:WARNING ID:100.0% COV:55.89% Best_match:contig00014 len=836 cov=2.5 corr=0 origname=NODE_172_length_836_cov_2.489422_pilon sw=shovill-spades/1.1.0 date=20220302:2..836:rep2_2_repR(pEF1)_DQ198088:55.890228
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
2 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
3 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
4 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
5 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
6 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
7 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
8 --------------GGGCTACATGCCAACGCTAATTTTAGAATCAGATCATGGTTATCAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
9 GTTTATTTTGTACTAAAGACACCAGGCTATGTCACAAAGAAAAGCAATTTCAAGGTGATC
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
10 GATGTAGCAAAAAAAATTTCAAAAACAATTCGTCTACAGTTGGCTGAAAAATTGTCCGGA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
11 GTGGATCTAGGATGTAACCACTTCGGAATTGCTCGATTCCCACAAGAAAATAATATTGTT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
12 TTTAAAGAAATGAACTATCAGTATTCTTTTGCTGACTGGATTCAATGGTCGATGAAGCTT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
13 GAATCAGATCAAAAAACAAAAGAAGATCGAGAACGAAAACTAATTGTCTTTCCTGAGAAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
14 AAAGAAATTCGTCAAGTAGATGAACCGTGGTTCGATATGTTACTTCATAAAGCAAACATC
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
15 GTCGGCGGAGAAGGACGTCTTGGTCGAAATAATGTGATTTTCACGCTTTCTTTAGCTTAT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
16 TACTCTTCAGGTTATGCATTGGATACTTGCGAATACAATATGTTCACATTCAACGAACGG
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
17 TTACAGGAACCGCTATCTGAAGCAGAATTAGTAAAGATTGTACGTAGTGCTTATTCTGGT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
18 AATTATCAAGCAGCAAGCAGAGAATTCATTATTGAATTGTGCCAGCAATGGGTTTCACCA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
19 ACCTTAAAAAATAATGATCTGTTCATTCAACGACGTGGCTGGTGGAAATTTAAAAAGCCA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
20 CGAGATCAAAGAAAATATAGTCATAAAAATGAATGGAAAGAAGATCTATTGGCTTATCTA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
21 AGCGAAAAAAGTCTTGCTAGTGAGCCTTATTTGAACCTGTCAAAAAAAGAATTGGCTTCA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
22 CAACTAACG---------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
23 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
24 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
25 ------------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
26 ------------------------------------------------------
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
27 >rep11a:WARNING ID:99.89% COV:100.0% Best_match:contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
28 ATGGCTAATGAGATTGTAAAATACCACCATGAGTTAAATACAATTCCTTTAAGAAAATTT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
29 ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
30 AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
31 AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
32 GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
33 ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
34 TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
35 AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
36 TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
37 GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
38 CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
39 ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
40 GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
41 ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
42 CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
43 GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
44 >rep14a:WARNING ID:99.5% COV:100.0% Best_match:contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
45 GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
46 ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
47 GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
48 AAACCTATTGATAAAATAGTTATTGATGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
49 ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
50 GAGTTAACGAATCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
51 TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
52 >rep14a:WARNING ID:78.5% COV:97.01% Best_match:contig00009 len=2060 cov=9.4 corr=0 origname=NODE_14_length_2060_cov_9.400414_pilon sw=shovill-spades/1.1.0 date=20220302:1478..1872:rep14a_2_ORF1(pKQ10)_EFU01917:76.156716
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
53 ATTCGGATGTATAATAAAAAACTGGAACAAGAGAA-GAAAAGAAA-AATTGTGCCAAAAG
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
54 AAATCGTGAGTTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACAGATTGGC
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
55 ATGCGATGGTTCGGGAAAGTTTAGATAGCTTTGCAAGTCCTCATTACTTGCCTGGA-GAT
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
56 GTAAAACCTGTTGATAGAATTATGATAAAAGGGCTGA-ATCAAGATCATTCAGAGTGGGC
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
57 GTATATTAGC-AGAAATTTGAAATATAGATTGCGCAAATTGTTGAAAGAAGAAAGCCAAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
58 ATGATGAATTGACGAATCATTTGCGAGAAACCTTTGCAGAATCGGCAGACGATTTAAAAA
7c8c8a816114 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 2cb90e0f01974c35c0ea84789a3d19c704b91c84
pimarin
parents:
diff changeset
59 AAGAATTAGACACATGGCTTCTAGGGCTAGACGTAACAGAGGAGTGA