Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

diff data_manager/plasmidfinder_fetch_database.py @ 9:464ffa0526c6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 8146dca92a35830d7e83d8eff031a92cdc7591bd-dirty
author pimarin
date Wed, 23 Aug 2023 12:42:32 +0000
parents f99089461adb
children
line wrap: on
line diff
--- a/data_manager/plasmidfinder_fetch_database.py	Wed Aug 23 12:17:01 2023 +0000
+++ b/data_manager/plasmidfinder_fetch_database.py	Wed Aug 23 12:42:32 2023 +0000
@@ -87,8 +87,9 @@
         self._commit_number = None
 
     def git_clone(self):
-        git.Repo.clone_from(url=self._plasmidfinder_url, to_path=self._output_dir)
-        self._plasmidfinder_repository = git.Repo(path=self._output_dir)
+        self.plasmidfinder_db_path = f'{self._output_dir}/{self._db_name}'
+        git.Repo.clone_from(url=self._plasmidfinder_url, to_path=self.plasmidfinder_db_path)
+        self._plasmidfinder_repository = git.Repo(path=self.plasmidfinder_db_path)
 
     def get_commit_number(self):
         sha = self._plasmidfinder_repository.head.commit.hexsha