Mercurial > repos > pimarin > data_manager_fetch_plasmidfinder

comparison data_manager/plasmidfinder_fetch_database.py @ 8:f99089461adb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit 8146dca92a35830d7e83d8eff031a92cdc7591bd
author pimarin
date Wed, 23 Aug 2023 12:17:01 +0000
parents 60cfd33bc2fb
children 464ffa0526c6
comparison
equal deleted inserted replaced
7:ed0f59ab5e61 8:f99089461adb
13 Create the json file with database information for galaxy data manager 13 Create the json file with database information for galaxy data manager
14 """ 14 """
15 15
16 def __init__(self, 16 def __init__(self,
17 plasmidfinder_database="plasmidfinder_database", 17 plasmidfinder_database="plasmidfinder_database",
18 db_name="plasmidfinder_database", 18 db_name="plasmidfinder-db",
19 plasmidfinder_version="latest"): 19 plasmidfinder_version="latest"):
20 self.data_table_name = plasmidfinder_database 20 self.data_table_name = plasmidfinder_database
21 self._db_name = db_name 21 self._db_name = db_name
22 self._plasmidfinder_version = plasmidfinder_version 22 self._plasmidfinder_version = plasmidfinder_version
23 self._plasmidfinder_date_version = None 23 self._plasmidfinder_date_version = None
67 """ 67 """
68 68
69 def __init__(self, 69 def __init__(self,
70 output_dir=Path.cwd(), 70 output_dir=Path.cwd(),
71 plasmidfinder_url="https://bitbucket.org/genomicepidemiology/plasmidfinder_db/src/master", 71 plasmidfinder_url="https://bitbucket.org/genomicepidemiology/plasmidfinder_db/src/master",
72 db_name="plasmidfinder_database", 72 db_name="plasmidfinder-db",
73 db_tmp="tmp_database", 73 db_tmp="tmp_database",
74 plasmidfinder_version="latest", 74 plasmidfinder_version="latest",
75 json_file_path=None, 75 json_file_path=None,
76 date_version=None): 76 date_version=None):
77 77