--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_build_amrfinderplus.xml	Tue Dec 20 13:43:51 2022 +0000
@@ -0,0 +1,92 @@
+<tool id="data_manager_build_amrfinderplus" name="amrfinderplus_datamanager" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>AMRfinderplus database builder</description>
+    <macros>
+        <import>macro.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code">
+      <![CDATA[
+        python '$__tool_directory__/data_manager_build_amrfinderplus.py'
+        '$output_file'
+        --db_version '$database_list.database_version_select'
+        #if $database_list.database_version_select != 'latest':
+            --db_date '$database_list.database_date_select'
+        #end if
+        $test_data_manager
+      ]]></command>
+    <inputs>
+        <conditional name="database_list">
+            <param name="database_version_select" type="select" label="Database version">
+                <option value="latest" selected="true">Latest available version</option>
+                <option value="3.10">V3.10</option>
+                <option value="3.9">V3.9</option>
+                <option value="3.8">V3.8</option>
+                <option value="3.6">V3.6</option>
+            </param>
+            <when value="latest">
+            </when>
+            <when value="3.10">
+                <param name="database_date_select" type="select" label="Date version">
+                <option value="2022-10-11.2" selected="true">2022-10-11.2</option>
+                <option value="2022-08-09.1">2022-08-09.1</option>
+                <option value="2022-05-26.1">2022-05-26.1</option>
+                <option value="2022-04-04.1">2022-04-04.1</option>
+                <option value="2021-12-21.1">2021-12-21.1</option>
+                <option value="2021-09-30.1">2021-09-30.1</option>
+                <option value="2021-09-30.1">2021-08-11.1</option>
+                <option value="2021-09-30.1">2021-06-01.1</option>
+                <option value="2021-09-30.1">2021-03-01.1</option>
+                </param>
+            </when>
+            <when value="3.9">
+                <param name="database_date_select" type="select" label="Date version">
+                <option value="2020-11-09.1" selected="true">2020-11-09.1</option>
+                <option value="2020-12-17.1">2020-12-17.1</option>
+                </param>
+            </when>
+             <when value="3.8">
+                <param name="database_date_select" type="select" label="Date version">
+                <option value="2020-09-30.1" selected="true">2020-09-30.1</option>
+                <option value="2020-09-22.2">2020-09-22.2</option>
+                <option value="2020-07-16.2">2020-07-16.2</option>
+                <option value="2020-06-11.1">2020-06-11.1</option>
+                <option value="2020-05-04.1">2020-05-04.1</option>
+                </param>
+            </when>
+            <when value="3.6">
+                <param name="database_date_select" type="select" label="Date version">
+                <option value="2020-01-22.1" selected="true">2020-01-22.1</option>
+                <option value="2020-03-20.1">2020-03-20.1</option>
+                </param>
+            </when>
+        </conditional>
+         <param name="test_data_manager" type="hidden" value=""/>
+    </inputs>
+    <outputs>
+        <data name="output_file" format="data_manager_json"/>
+    </outputs>
+    <tests>
+        <!-- Test_1 DB latest -->
+        <test expect_num_outputs="1">
+            <param name="test_data_manager" value="--test"/>
+            <output name="output_file" value="amrfinderplus_test_data_manager_1.json"/>
+        </test>
+        <!-- Test_2 DB 3.2 -->
+        <test expect_num_outputs="1">
+            <param name="test_data_manager" value="--test"/>
+            <conditional name="database_list">
+                <param name="database_version_select" value="3.6"/>
+                <param name="database_date_select" value="2020-03-20.1"/>
+            </conditional>
+            <output name="output_file" value="amrfinderplus_test_data_manager_2.json"/>
+        </test>
+
+
+    </tests>
+    <help><![CDATA[
+        Download amrfinderplus database from the NCBI server
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1038/s41598-021-91456-0</citation>
+    </citations>
+</tool>