Mercurial > repos > pimarin > data_manager_build_amrfinderplus

comparison data_manager/data_manager_build_amrfinderplus.py @ 1:75f79148cb06 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_amrfinderplus commit dd78d1ba0f784a0a122159c4a6d192b8d65f6a8c-dirty
author pimarin
date Thu, 22 Dec 2022 09:51:41 +0000
parents 43ec3aadda50
children
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0:43ec3aadda50 1:75f79148cb06
1 import argparse 1 import argparse
2 import json 2 import json
3 import os 3 import os
4 import subprocess as sp 4 import subprocess as sp
5 from ftplib import FTP 5 from ftplib import FTP
6
7 import pandas as pd
8 from io import BytesIO 6 from io import BytesIO
9 from pathlib import Path 7 from pathlib import Path
8
9 import pandas as pd
10 10
11 11
12 class GetAmrFinderPlusDataManager: 12 class GetAmrFinderPlusDataManager:
13 """ 13 """
14 Create the json file with database information for galaxy data manager 14 Create the json file with database information for galaxy data manager