Mercurial > repos > pimarin > data_manager_bakta

changeset 7:47a3aac8fcf7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit 4e0fa611488db8c2c30a5f332eef86fcf24c13af-dirty
author pimarin
date Thu, 27 Oct 2022 15:21:45 +0000
parents 3b9969001f3f
children a1cd2e86adbf
files data_manager/bakta_build_database.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/bakta_build_database.xml	Thu Oct 27 15:07:44 2022 +0000
+++ b/data_manager/bakta_build_database.xml	Thu Oct 27 15:21:45 2022 +0000
@@ -8,8 +8,8 @@
     <expand macro="version_command"/>
 
     <command detect_errors="aggressive"><![CDATA[
-        mkdir 'output_file' &&
-        ln -s '$output_file' 'output_file/json_output' &&
+        mkdir './output_dir_json' &&
+        ln -s '$output_file' './output_dir_json/json_output.json' &&
         python '$__tool_directory__/bakta_build_database.py'
         './output_file/json_output'
         --database_version '$database_select'
@@ -26,7 +26,7 @@
         </param>
     </inputs>
     <outputs>
-        <data name="output_file" format="data_manager_json" from_work_dir="output_file/json_output"/>
+        <data name="output_file" format="data_manager_json" from_work_dir="./output_dir_json/json_output.json"/>
     </outputs>
     <tests>
         <!-- Test download -->