Mercurial > repos > pimarin > data_manager_bakta

comparison data_manager/bakta_build_database.xml @ 4:68dd65d2985d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit 2fa443ab6c1b3513a585123edd2cdf864e5123ae-dirty
author pimarin
date Thu, 27 Oct 2022 15:00:34 +0000
parents decc1723cf97
children b475dd46612e
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3:acea53e44d1b 4:68dd65d2985d
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="version_command"/> 8 <expand macro="version_command"/>
9 9
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 mkdir ./output_file &&
12 ln -s '$output_file' '/output_file/json_output' &&
11 python '$__tool_directory__/bakta_build_database.py' 13 python '$__tool_directory__/bakta_build_database.py'
12 '$output_file' 14 '/output_file/json_output'
13 --database_version '$database_select' 15 --database_version '$database_select'
14 ]]></command> 16 ]]></command>
15 <inputs> 17 <inputs>
16 <param name="database_select" type="select" label="Database version" help="Choose a database version to download (default latest version)" > 18 <param name="database_select" type="select" label="Database version" help="Choose a database version to download (default latest version)" >
17 <option value="1.0"> V1.0_2020-11-20 </option> 19 <option value="1.0"> V1.0_2020-11-20 </option>
22 <option value="4.0" selected="true" > V4.0_2022-08-29 </option> 24 <option value="4.0" selected="true" > V4.0_2022-08-29 </option>
23 <option value="test"> database_test </option> 25 <option value="test"> database_test </option>
24 </param> 26 </param>
25 </inputs> 27 </inputs>
26 <outputs> 28 <outputs>
27 <data name="output_file" format="data_manager_json"/> 29 <data name="output_file" format="data_manager_json" from_work_dir="/output_file/json_output"/>
28 </outputs> 30 </outputs>
29 <tests> 31 <tests>
30 <!-- Test download --> 32 <!-- Test download -->
31 <test expect_num_outputs="1"> 33 <test expect_num_outputs="1">
32 <param name="database_select" value="test"/> 34 <param name="database_select" value="test"/>