Mercurial > repos > pimarin > data_manager_bakta

comparison data_manager/bakta_build_database.xml @ 9:683b09c92299 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit 4e0fa611488db8c2c30a5f332eef86fcf24c13af-dirty
author pimarin
date Thu, 27 Oct 2022 15:26:46 +0000
parents a1cd2e86adbf
children c50e8b4f74d7
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8:a1cd2e86adbf 9:683b09c92299
9 9
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 mkdir './output_dir_json' && 11 mkdir './output_dir_json' &&
12 ln -s '$output_file' './output_dir_json/json_output.json' && 12 ln -s '$output_file' './output_dir_json/json_output.json' &&
13 python '$__tool_directory__/bakta_build_database.py' 13 python '$__tool_directory__/bakta_build_database.py'
14 './output_file/json_output' 14 './output_dir_json/json_output.json'
15 --database_version '$database_select' 15 --database_version '$database_select'
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <param name="database_select" type="select" label="Database version" help="Choose a database version to download (default latest version)" > 18 <param name="database_select" type="select" label="Database version" help="Choose a database version to download (default latest version)" >
19 <option value="latest"> Latest available version </option> 19 <option value="latest" selected="true" > Latest available version </option>
20 <option value="1.0"> V1.0_2020-11-20 </option> 20 <option value="1.0"> V1.0_2020-11-20 </option>
21 <option value="1.1"> V1.1_2020-12-18 </option> 21 <option value="1.1"> V1.1_2020-12-18 </option>
22 <option value="2.0"> V2.0_2021-04-05 </option> 22 <option value="2.0"> V2.0_2021-04-05 </option>
23 <option value="3.0"> V3.0_2021-08-05 </option> 23 <option value="3.0"> V3.0_2021-08-05 </option>
24 <option value="3.1"> V3.1_2022-02-03 </option> 24 <option value="3.1"> V3.1_2022-02-03 </option>
25 <option value="4.0" selected="true" > V4.0_2022-08-29 </option> 25 <option value="4.0"> V4.0_2022-08-29 </option>
26 <option value="test"> database_test </option> 26 <option value="test"> database_test </option>
27 </param> 27 </param>
28 </inputs> 28 </inputs>
29 <outputs> 29 <outputs>
30 <data name="output_file" format="data_manager_json" from_work_dir="./output_dir_json/json_output.json"/> 30 <data name="output_file" format="data_manager_json" from_work_dir="./output_dir_json/json_output.json"/>