Mercurial > repos > pimarin > data_manager_bakta

comparison data_manager/bakta_build_database.xml @ 7:47a3aac8fcf7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit 4e0fa611488db8c2c30a5f332eef86fcf24c13af-dirty
author pimarin
date Thu, 27 Oct 2022 15:21:45 +0000
parents 3b9969001f3f
children a1cd2e86adbf
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6:3b9969001f3f 7:47a3aac8fcf7
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="version_command"/> 8 <expand macro="version_command"/>
9 9
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 mkdir 'output_file' && 11 mkdir './output_dir_json' &&
12 ln -s '$output_file' 'output_file/json_output' && 12 ln -s '$output_file' './output_dir_json/json_output.json' &&
13 python '$__tool_directory__/bakta_build_database.py' 13 python '$__tool_directory__/bakta_build_database.py'
14 './output_file/json_output' 14 './output_file/json_output'
15 --database_version '$database_select' 15 --database_version '$database_select'
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
24 <option value="4.0" selected="true" > V4.0_2022-08-29 </option> 24 <option value="4.0" selected="true" > V4.0_2022-08-29 </option>
25 <option value="test"> database_test </option> 25 <option value="test"> database_test </option>
26 </param> 26 </param>
27 </inputs> 27 </inputs>
28 <outputs> 28 <outputs>
29 <data name="output_file" format="data_manager_json" from_work_dir="output_file/json_output"/> 29 <data name="output_file" format="data_manager_json" from_work_dir="./output_dir_json/json_output.json"/>
30 </outputs> 30 </outputs>
31 <tests> 31 <tests>
32 <!-- Test download --> 32 <!-- Test download -->
33 <test expect_num_outputs="1"> 33 <test expect_num_outputs="1">
34 <param name="database_select" value="test"/> 34 <param name="database_select" value="test"/>