Mercurial > repos > pimarin > data_manager_amrfinderplus

comparison data_manager/amrfinderplus_data_manager.xml @ 2:f1ec3a39ffec draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_amrfinderplus commit 25a0413337c540dc9f26bc7ee097d493f0d148ca-dirty
author pimarin
date Mon, 14 Nov 2022 14:22:02 +0000
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1:254479b50f86 2:f1ec3a39ffec
1 <tool id="amrfinderplus_build_database" name="amrfinderplus" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>AMRfinderplus database builder</description>
3 <macros>
4 <import>macro.xml</import>
5 </macros>
6 <expand macro="requirements"/>
7 <command detect_errors="exit_code">
8 <![CDATA[
9 python '$__tool_directory__/amrfinderplus_data_manager.py'
10 '$output_file'
11 ]]></command>
12 <inputs>
13 <param name="database_select" type="select" label="Database version">
14 <option value="latest" selected="true">Latest available version</option>
15 </param>
16 </inputs>
17 <outputs>
18 <data name="output_file" format="data_manager_json"/>
19 </outputs>
20 <tests>
21 <!-- Test download -->
22 <test expect_num_outputs="1">
23 <output name="output_file" value="amrfinderplus_test_data_manager.json" />
24 </test>
25 </tests>
26 <help><![CDATA[
27 Download the latest version of amrfinderplus database from the NCBI
28 ]]></help>
29 <citations>
30 <citation type="doi">10.1038/s41598-021-91456-0</citation>
31 </citations>
32 </tool>