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view test-data/TEST_2/TEST_2.gff3 @ 2:ca9e2125c5de draft

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"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit fe1cdf884df206d842be4f0768acb06b0bbcf56f"
author pimarin
date Wed, 17 Aug 2022 10:29:37 +0000
parents 4d315de96666
children eea334d9988b
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##gff-version 3
##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo
# organism Escherichia coli o157:h7 Sakai
# Annotated with Bakta
# Software: v1.4.2
# Database: v3.0
# DOI: 10.1099/mgen.0.000685
# URL: github.com/oschwengers/bakta
##sequence-region NC_002127.1 1 3306
NC_002127.1	Bakta	region	1	3306	.	+	.	ID=NC_002127.1;Name=NC_002127.1;Is_circular=true
NC_002127.1	Prodigal	CDS	2	736	.	+	0	ID=DOGAIA_00005;Name=hypothetical protein;locus_tag=DOGAIA_00005;product=hypothetical protein
NC_002127.1	Prodigal	CDS	971	1351	.	-	0	ID=DOGAIA_00010;Name=hypothetical protein;locus_tag=DOGAIA_00010;product=hypothetical protein
NC_002127.1	Prodigal	CDS	1348	2388	.	-	0	ID=DOGAIA_00015;Name=hypothetical protein;locus_tag=DOGAIA_00015;product=hypothetical protein
##FASTA
>NC_002127.1
TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC
GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC
AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG
TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT
TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT
GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC
CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA
ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA
AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT
ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA
AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA
CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG
GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT
AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA
TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC
AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC
TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA
GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT
CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT
TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA
AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC
TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG
CTTCTATTTGATATTTTTTATCTTTTTTCATAATTTCAACCTAGCTACGCCACCATCTAT
TAATTGGCAAACGGTATCGATGATTGCGATTGATTCTAATTTGTTAATTGTCTTCGTGTC
AGCTATTCCTGGTTTCATATGAAACAAACCATGCCTGTTCTCATGCCAGTAAGTGTAGCA
TTCACACAAAACTTCCGCTATTTCACCATTTATAGTTTCTTGGTGTATTTCTCTGATTAT
ATATTTGGGTTTGTTTTCAGTGAAGTATTCGCCAAGGTTCTTTGATGATGATGGATTGCA
AACATCATTAAGTATTTGATATATAAAGCCTTCTATGGCTCTTAATGCAGAGAAGCAGTA
TGTTGAGTAATCTTCCATTTCGACATCTATTTTTTTCATTATTAGCGAGCATGATAGCTG
TTTTTTGATATCTTCATGGATTTTATCGATGCTTTTTGGTAGTTTGCTATGCAACTCGGA
CTCAATAGTTTCTTTTTTTATGTCAACATTAAATTCTTTATTTTTTTGTTCGACAATCTC
TTTCATGTTTAGTATTGAGCACATGAAATCGTTAATCAAACTCGCGATTTGAAGGTATTT
TCCTTGGAATTGAATAGAGCCGCGCTTGTAAATTTTTGCCCTGACCCTGTCACCATTGCT
GGTGGTCATAATATATTGGTGTTTACAATTAGGATCGTTATTATTATCTTCTGTTATTGT
TATCCCCTCTTCAGAAAGAAATTCAAATAGATTTGCCCTGTCATCATCACTGAATTTTGG
AATGGTGTATTCAAAGTTCTTTGTGTCTGAATACAAACAGTTTTCTTTTATAATCAAGGC
GATTTCATCAAAGTAAGTGTTATTTTGCCCAGACGCTCTTCCGATAGTGGTATTTCCGCC
TGATGGCATTAGTTTTATTAAGAAGTCTATTCCTTTATATGTGCCAGATATGTGAGTTTC
TCTTTCGTTTTTTACATTAGAGGAATAGTTTGTGACGCCATTCTGCGTCAGAGCAGACTC
AATCTTGTCAATATTGATATTTAGTGCTTTAAACGGGTTCTGTGCCATTGGGTCAATCCG
TTGTTTTTTTTGAATATGTACAGATCTTGTTTTTTTGTCAACGGAATAGCTGTTCGTTGA
CTTGATAGACCGATTGATTCATCATCTCATAAATAAAGAAAAACCACCGCTACCAACGGT
GGTTTTCTCAAGGTTCGCTGAGCTACCAACTCTTTGAACCAAGGTAACTGGCTTGGAGGA
GCGCAGTCACCAAAATCTGTTCTTTCAGTTTAGCCTTAACAGGTGCATAACTTCAAGACA
AACTCCTCTAAATCAGTTACCAATGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGG
GTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTC
GTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCAACAGCGTGA
GCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGTGG
CAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCGGGGGGAAACGCCTGGTATCTTTA
TAGTCCTGTCGGGTTTCGCCACCTCTGGCTTGAGCGTCGATTTTTGTGATGCTCGTCAGG
GGGGCGGAGCCTATGGAAAAACGCCTGCGGTGCTGGCTTCTTCCGGTGCTTTGCTTTTTG
CTCACATGTTCTTTCCGGCTTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTG
AGTGAGCTGACACCGCTCGCCGCAGTCGAACGACCGAGCGTAGCGAGTCAGTGAGCGAGG
AAGCGGAAGAGCGCCTTATGTGACATTTTCTCCTTACGCTCTGTTGTGCCGTTCGGCATC
CTGCCCTGAGCGTTATATCTCTGTGCTATTTTCTACTTCAAAGCGTGTCTGTATGCTGTT
CTGGAG