Mercurial > repos > pimarin > bakta
diff test-data/tmp/TEST_1.json @ 3:eea334d9988b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
| author | pimarin |
|---|---|
| date | Thu, 22 Dec 2022 15:01:43 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tmp/TEST_1.json Thu Dec 22 15:01:43 2022 +0000 @@ -0,0 +1,105 @@ +{ + "genome": { + "genus": null, + "species": null, + "strain": null, + "complete": true, + "gram": "?", + "translation_table": 11 + }, + "stats": { + "no_sequences": 1, + "size": 1330, + "gc": 0.4518796992481203, + "n_ratio": 0.0, + "n50": 1330, + "coding_ratio": 0.6203007518796992 + }, + "features": [ + { + "type": "cds", + "contig": "contig_1", + "start": 413, + "stop": 736, + "strand": "+", + "gene": null, + "product": "hypothetical protein", + "start_type": "ATG", + "rbs_motif": "GGAG/GAGG", + "db_xrefs": [], + "frame": 2, + "aa": "MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD", + "aa_hexdigest": "d9bdebc84195542e775c3d22458b507e", + "nt": "ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG", + "hypothetical": true, + "seq_stats": { + "molecular_weight": 12072.90819999999, + "isoelectric_point": 10.367886161804197 + }, + "id": "IHHALPPJCH_1", + "locus": "IHHALP_00005" + }, + { + "type": "cds", + "contig": "contig_1", + "start": 971, + "stop": 141, + "strand": "-", + "gene": null, + "product": "hypothetical protein", + "start_type": "ATG", + "rbs_motif": "AGGA/GGAG/GAGG", + "db_xrefs": [], + "frame": 1, + "aa": "MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI", + "aa_hexdigest": "1e7027cbe48346e06a83e802a9385584", + "edge": true, + "nt": "ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA", + "hypothetical": true, + "seq_stats": { + "molecular_weight": 18866.325799999995, + "isoelectric_point": 7.696590614318848 + }, + "id": "IHHALPPJCH_2", + "locus": "IHHALP_00010" + } + ], + "sequences": [ + { + "id": "contig_1", + "description": "[completeness=complete] [topology=circular] [gcode=11]", + "sequence": "TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGTAAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGATCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTCTGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAAGGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGCTCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG", + "length": 1330, + "complete": true, + "type": "plasmid", + "topology": "circular", + "simple_id": "contig_1", + "orig_id": "NC_002127.1", + "orig_description": "Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete sequence", + "name": "unnamed1" + } + ], + "run": { +<<<<<<< HEAD:tools/bakta/test-data/tmp/TEST_1.json +<<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.json + "start": "2022-12-19 10:20:24", + "end": "2022-12-19 10:20:25" +======= +<<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.json + "start": "2022-09-16 07:32:48", + "end": "2022-09-16 07:32:50" +======= + "start": "2022-12-21 14:34:38", + "end": "2022-12-21 14:34:39" +>>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.json +>>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.json +======= + "start": "2022-12-21 19:53:30", + "end": "2022-12-21 19:53:31" +>>>>>>> 195c8410c (change option for plot):tools/bakta/test-data/TEST_1/TEST_1.json + }, + "version": { + "bakta": "1.6.1", + "db": "4.0" + } +} \ No newline at end of file
