Mercurial > repos > pimarin > bakta

diff test-data/TEST_3/TEST_3.gbff @ 3:eea334d9988b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
parents ca9e2125c5de
children 8c7499c6f32a
line wrap: on
line diff
--- a/test-data/TEST_3/TEST_3.gbff	Wed Aug 17 10:29:37 2022 +0000
+++ b/test-data/TEST_3/TEST_3.gbff	Thu Dec 22 15:01:43 2022 +0000
@@ -1,4 +1,4 @@
-LOCUS       contig_1                3306 bp    DNA     circular BCT 17-AUG-2022
+LOCUS       contig_1                1330 bp    DNA     circular BCT 19-DEC-2022
 DEFINITION  plasmid unnamed1, complete sequence.
 ACCESSION   contig_1
 VERSION     contig_1
@@ -7,16 +7,16 @@
   ORGANISM  .
             .
 COMMENT     Annotated with Bakta
-            Software: v1.4.2
-            Database: v3.0
+            Software: v1.6.1
+            Database: v4.0
             DOI: 10.1099/mgen.0.000685
             URL: github.com/oschwengers/bakta
             
             ##Genome Annotation Summary:##
-            Annotation Date                :: 08/17/2022, 09:35:50
+            Annotation Date                :: 12/19/2022, 10:21:03
             Annotation Pipeline            :: Bakta
-            Annotation Software version    ::  v1.4.2
-            Annotation Database version    ::  v3.0
+            Annotation Software version    ::  v1.6.1
+            Annotation Database version    ::  v4.0
             CDSs                           ::     0
             tRNAs                          ::     0
             tmRNAs                         ::     0
@@ -27,8 +27,9 @@
             oriCs/oriVs                    ::     0
             oriTs                          ::     0
             gaps                           ::     0
+            pseudogenes                    ::     0
 FEATURES             Location/Qualifiers
-     source          1..3306
+     source          1..1330
                      /mol_type="genomic DNA"
                      /plasmid="unnamed1"
 ORIGIN
@@ -54,38 +55,5 @@
      1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
      1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
      1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
-     1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat
-     1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc
-     1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca
-     1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat
-     1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca
-     1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta
-     1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg
-     1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga
-     1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc
-     1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt
-     1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct
-     1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt
-     2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg
-     2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc
-     2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc
-     2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc
-     2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc
-     2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg
-     2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga
-     2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt
-     2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga
-     2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca
-     2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg
-     2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc
-     2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga
-     2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg
-     2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta
-     2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg
-     3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg
-     3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg
-     3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg
-     3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc
-     3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt
-     3301 ctggag
+     1321 cttctatttg
 //