--- a/test-data/TEST_2/TEST_2.log	Wed Aug 17 10:29:37 2022 +0000
+++ b/test-data/TEST_2/TEST_2.log	Thu Dec 22 15:01:43 2022 +0000
@@ -1,22 +1,22 @@
+
 parse genome sequences...
 	imported: 1
 	filtered & revised: 1
 	plasmids: 1
 
 start annotation...
-predict tRNAs...
-	found: 0
-predict tmRNAs...
-	found: 0
+skip tRNA prediction...
+skip tmRNA prediction...
 predict rRNAs...
 	found: 0
 predict ncRNAs...
 	found: 0
 predict ncRNA regions...
 	found: 0
-skip CRISPR array prediction...
+predict CRISPR arrays...
+	found: 0
 predict & annotate CDSs...
-	predicted: 3 
+	predicted: 2 
 	discarded spurious: 0
 	revised translational exceptions: 0
 	detected IPSs: 0
@@ -27,35 +27,39 @@
 		amrfinder: 0
 		protein sequences: 0
 	combine annotations and mark hypotheticals...
-	analyze hypothetical proteins: 3
+	detect pseudogenes...
+		pseudogene candidates: 0
+		found pseudogenes: 0
+analyze hypothetical proteins: 2
 	detected Pfam hits: 0 
 	calculated proteins statistics
 	revise special cases...
 extract sORF...
-	potential: 52
-	discarded due to overlaps: 36
+	potential: 22
+	discarded due to overlaps: 2
 	discarded spurious: 0
 	detected IPSs: 0
 	found PSCs: 0
 	lookup annotations...
 	filter and combine annotations...
 	filtered sORFs: 0
-skip gap annotation...
+detect gaps...
+	found: 0
 detect oriCs/oriVs...
 	found: 0
 detect oriTs...
 	found: 0
 apply feature overlap filters...
 select features and create locus tags...
-selected: 3
+selected: 2
 
 genome statistics:
-	Genome size: 3,306 bp
+	Genome size: 1,330 bp
 	Contigs/replicons: 1
-	GC: 43.4 %
-	N50: 3,306
+	GC: 45.2 %
+	N50: 1,330
 	N ratio: 0.0 %
-	coding density: 65.2 %
+	coding density: 62.0 %
 
 annotation summary:
 	tRNAs: 0
@@ -64,21 +68,23 @@
 	ncRNAs: 0
 	ncRNA regions: 0
 	CRISPR arrays: 0
-	CDSs: 3
-	  hypotheticals: 3
+	CDSs: 2
+	  hypotheticals: 2
+	  pseudogenes: 0
 	  signal peptides: 0
 	sORFs: 0
 	gaps: 0
 	oriCs/oriVs: 0
 	oriTs: 0
 
-export annotation results to: /tmp/tmpd2jvcl6c/job_working_directory/000/4/working
+export annotation results to: /tmp/tmptbkng6kx/job_working_directory/000/4/working
 	human readable TSV...
 	GFF3...
 	INSDC GenBank & EMBL...
 	genome sequences...
 	feature nucleotide sequences...
 	translated CDS sequences...
+	circular genome plot...
 	hypothetical TSV...
 	translated hypothetical CDS sequences...
 	machine readable JSON...