--- a/macro.xml	Wed Aug 17 10:29:37 2022 +0000
+++ b/macro.xml	Thu Dec 22 15:01:43 2022 +0000
@@ -1,66 +1,30 @@
-<?xml version="1.0"?>
+
 <macros>
-  <token name="@TOOL_VERSION@">1.4.2</token>
-  <token name="@VERSION_SUFFIX@">0</token>
-  <token name="@PROFILE@">21.05</token>
-  <xml name="version_command">
-     <version_command><![CDATA[bakta --version]]></version_command>
-  </xml>
-  <xml name="edam">
-    <edam_topics>
-        <edam_topic>topic_3174</edam_topic>
-    </edam_topics>
+    <token name="@TOOL_VERSION@">1.6.1</token>
+    <token name="@BAKTA_VERSION@">1.5</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">21.05</token>
+    <xml name="version_command">
+        <version_command><![CDATA[bakta --version]]></version_command>
+    </xml>
+    <xml name="edam">
+      <edam_topics>
+          <edam_topic>topic_3174</edam_topic>
+      </edam_topics>
     </xml>
-  <xml name="xrefs">
-    <xrefs>
-      <xref type='bio.tools'>Bakta</xref>
-    </xrefs>
-  </xml>
-  <xml name="requirements">
-    <requirements>
-      <requirement type="package" version="@TOOL_VERSION@">bakta</requirement>
-    </requirements>
-  </xml>
-  <xml name="citations">
-      <citations>
-        <citation type="bibtex">
-          @article{mbs:/content/journal/mgen/10.1099/mgen.0.000685,
-   author = "Schwengers, Oliver and Jelonek, Lukas and Dieckmann, Marius Alfred and Beyvers, Sebastian and Blom, Jochen and Goesmann, Alexander",
-   title = "Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification",
-   journal= "Microbial Genomics",
-   year = "2021",
-   volume = "7",
-   number = "11",
-   pages = "",
-   doi = "https://doi.org/10.1099/mgen.0.000685",
-   url = "https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000685",
-   publisher = "Microbiology Society",
-   issn = "2057-5858",
-   type = "Journal Article",
-   keywords = "whole-genome sequencing",
-   keywords = "bacteria",
-   keywords = "metagenome-assembled genomes",
-   keywords = "plasmids ",
-   keywords = "genome annotation",
-   eid = "000685",
-   abstract = "Command-line annotation software tools have continuously gained popularity compared to
-   centralized online services due to the worldwide increase of sequenced bacterial genomes.
-   However, results of existing command-line software pipelines heavily depend on taxon-specific
-   databases or sufficiently well annotated reference genomes. Here, we introduce Bakta, a new command-line
-   software tool for the robust, taxon-independent, thorough and, nonetheless, fast annotation of bacterial genomes.
-   Bakta conducts a comprehensive annotation workflow including the detection of small proteins taking into account
-   replicon metadata. The annotation of coding sequences is accelerated via an alignment-free sequence identification
-   approach that in addition facilitates the precise assignment of public database cross-references.
-   Annotation results are exported in GFF3 and International Nucleotide Sequence Database Collaboration (INSDC)-compliant flat files,
-   as well as comprehensive JSON files, facilitating automated downstream analysis.
-   We compared Bakta to other rapid contemporary command-line annotation software tools in both targeted and taxonomically broad benchmarks
-   including isolates and metagenomic-assembled genomes. We demonstrated that Bakta outperforms other tools in terms of functional annotations,
-   the assignment of functional categories and database cross-references, whilst providing comparable wall-clock runtimes.
-   Bakta is implemented in Python 3 and runs on MacOS and Linux systems.
-   It is freely available under a GPLv3 license at https://github.com/oschwengers/bakta.
-   An accompanying web version is available at https://bakta.computational.bio.",
-  }
-        </citation>
-      </citations>
-  </xml>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type='bio.tools'>Bakta</xref>
+        </xrefs>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">bakta</requirement>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1099/mgen.0.000685</citation>
+        </citations>
+    </xml>
 </macros>