Mercurial > repos > pimarin > bakta
diff test-data/TEST_1/TEST_1.log @ 0:4d315de96666 draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
| author | pimarin |
|---|---|
| date | Wed, 18 May 2022 11:13:45 +0000 |
| parents | |
| children | ca9e2125c5de |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TEST_1/TEST_1.log Wed May 18 11:13:45 2022 +0000 @@ -0,0 +1,90 @@ +parse genome sequences... + imported: 1 + filtered & revised: 1 + plasmids: 1 + +start annotation... +predict tRNAs... + found: 0 +predict tmRNAs... + found: 0 +predict rRNAs... + found: 0 +predict ncRNAs... + found: 0 +predict ncRNA regions... + found: 0 +predict CRISPR arrays... + found: 0 +predict & annotate CDSs... + predicted: 3 + discarded spurious: 0 + revised translational exceptions: 0 + detected IPSs: 0 + found PSCs: 0 + found PSCCs: 0 + lookup annotations... + conduct expert systems... + amrfinder: 0 + protein sequences: 0 + combine annotations and mark hypotheticals... + analyze hypothetical proteins: 3 + detected Pfam hits: 0 + calculated proteins statistics + revise special cases... +extract sORF... + potential: 52 + discarded due to overlaps: 36 + discarded spurious: 0 + detected IPSs: 0 + found PSCs: 0 + lookup annotations... + filter and combine annotations... + filtered sORFs: 0 +detect gaps... + found: 0 +detect oriCs/oriVs... + found: 0 +detect oriTs... + found: 0 +apply feature overlap filters... +select features and create locus tags... +selected: 3 + +genome statistics: + Genome size: 3,306 bp + Contigs/replicons: 1 + GC: 43.4 % + N50: 3,306 + N ratio: 0.0 % + coding density: 65.2 % + +annotation summary: + tRNAs: 0 + tmRNAs: 0 + rRNAs: 0 + ncRNAs: 0 + ncRNA regions: 0 + CRISPR arrays: 0 + CDSs: 3 + hypotheticals: 3 + signal peptides: 0 + sORFs: 0 + gaps: 0 + oriCs/oriVs: 0 + oriTs: 0 + +export annotation results to: /home/pierre/Seafile/ABROMICS/galaxy-tools/tools/bakta/test-data/TEST_1 + human readable TSV... + GFF3... + INSDC GenBank & EMBL... + genome sequences... + feature nucleotide sequences... + translated CDS sequences... + hypothetical TSV... + translated hypothetical CDS sequences... + machine readable JSON... + genome and annotation summary... + +If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 +Annotation successfully finished in 0:00 [mm:ss].