Mercurial > repos > pimarin > bakta

diff test-data/TEST_1/TEST_1.gff3 @ 0:4d315de96666 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit bf30715c881a622947d3d099d7a22e323e2ceef3-dirty"
author pimarin
date Wed, 18 May 2022 11:13:45 +0000
parents
children ca9e2125c5de
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/TEST_1/TEST_1.gff3	Wed May 18 11:13:45 2022 +0000
@@ -0,0 +1,70 @@
+##gff-version 3
+##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo
+# Annotated with Bakta
+# Software: v1.4.0
+# Database: v3.0
+# DOI: 10.1099/mgen.0.000685
+# URL: github.com/oschwengers/bakta
+##sequence-region contig_1 1 3306
+contig_1	Bakta	region	1	3306	.	+	.	ID=contig_1;Name=contig_1;Is_circular=true
+contig_1	Prodigal	CDS	2	736	.	+	0	ID=DOGAIA_00005;Name=hypothetical protein;locus_tag=DOGAIA_00005;product=hypothetical protein
+contig_1	Prodigal	CDS	971	1351	.	-	0	ID=DOGAIA_00010;Name=hypothetical protein;locus_tag=DOGAIA_00010;product=hypothetical protein
+contig_1	Prodigal	CDS	1348	2388	.	-	0	ID=DOGAIA_00015;Name=hypothetical protein;locus_tag=DOGAIA_00015;product=hypothetical protein
+##FASTA
+>contig_1
+TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC
+GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC
+AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG
+TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT
+TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT
+GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC
+CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA
+ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA
+AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT
+ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA
+AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA
+CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG
+GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT
+AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA
+TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC
+AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC
+TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA
+GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT
+CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT
+TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA
+AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC
+TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG
+CTTCTATTTGATATTTTTTATCTTTTTTCATAATTTCAACCTAGCTACGCCACCATCTAT
+TAATTGGCAAACGGTATCGATGATTGCGATTGATTCTAATTTGTTAATTGTCTTCGTGTC
+AGCTATTCCTGGTTTCATATGAAACAAACCATGCCTGTTCTCATGCCAGTAAGTGTAGCA
+TTCACACAAAACTTCCGCTATTTCACCATTTATAGTTTCTTGGTGTATTTCTCTGATTAT
+ATATTTGGGTTTGTTTTCAGTGAAGTATTCGCCAAGGTTCTTTGATGATGATGGATTGCA
+AACATCATTAAGTATTTGATATATAAAGCCTTCTATGGCTCTTAATGCAGAGAAGCAGTA
+TGTTGAGTAATCTTCCATTTCGACATCTATTTTTTTCATTATTAGCGAGCATGATAGCTG
+TTTTTTGATATCTTCATGGATTTTATCGATGCTTTTTGGTAGTTTGCTATGCAACTCGGA
+CTCAATAGTTTCTTTTTTTATGTCAACATTAAATTCTTTATTTTTTTGTTCGACAATCTC
+TTTCATGTTTAGTATTGAGCACATGAAATCGTTAATCAAACTCGCGATTTGAAGGTATTT
+TCCTTGGAATTGAATAGAGCCGCGCTTGTAAATTTTTGCCCTGACCCTGTCACCATTGCT
+GGTGGTCATAATATATTGGTGTTTACAATTAGGATCGTTATTATTATCTTCTGTTATTGT
+TATCCCCTCTTCAGAAAGAAATTCAAATAGATTTGCCCTGTCATCATCACTGAATTTTGG
+AATGGTGTATTCAAAGTTCTTTGTGTCTGAATACAAACAGTTTTCTTTTATAATCAAGGC
+GATTTCATCAAAGTAAGTGTTATTTTGCCCAGACGCTCTTCCGATAGTGGTATTTCCGCC
+TGATGGCATTAGTTTTATTAAGAAGTCTATTCCTTTATATGTGCCAGATATGTGAGTTTC
+TCTTTCGTTTTTTACATTAGAGGAATAGTTTGTGACGCCATTCTGCGTCAGAGCAGACTC
+AATCTTGTCAATATTGATATTTAGTGCTTTAAACGGGTTCTGTGCCATTGGGTCAATCCG
+TTGTTTTTTTTGAATATGTACAGATCTTGTTTTTTTGTCAACGGAATAGCTGTTCGTTGA
+CTTGATAGACCGATTGATTCATCATCTCATAAATAAAGAAAAACCACCGCTACCAACGGT
+GGTTTTCTCAAGGTTCGCTGAGCTACCAACTCTTTGAACCAAGGTAACTGGCTTGGAGGA
+GCGCAGTCACCAAAATCTGTTCTTTCAGTTTAGCCTTAACAGGTGCATAACTTCAAGACA
+AACTCCTCTAAATCAGTTACCAATGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGG
+GTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTC
+GTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCAACAGCGTGA
+GCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGTGG
+CAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCGGGGGGAAACGCCTGGTATCTTTA
+TAGTCCTGTCGGGTTTCGCCACCTCTGGCTTGAGCGTCGATTTTTGTGATGCTCGTCAGG
+GGGGCGGAGCCTATGGAAAAACGCCTGCGGTGCTGGCTTCTTCCGGTGCTTTGCTTTTTG
+CTCACATGTTCTTTCCGGCTTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTG
+AGTGAGCTGACACCGCTCGCCGCAGTCGAACGACCGAGCGTAGCGAGTCAGTGAGCGAGG
+AAGCGGAAGAGCGCCTTATGTGACATTTTCTCCTTACGCTCTGTTGTGCCGTTCGGCATC
+CTGCCCTGAGCGTTATATCTCTGTGCTATTTTCTACTTCAAAGCGTGTCTGTATGCTGTT
+CTGGAG