--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macro.xml	Wed May 18 11:13:45 2022 +0000
@@ -0,0 +1,61 @@
+<?xml version="1.0"?>
+<macros>
+  <token name="@TOOL_VERSION@">1.4.0</token>
+  <token name="@VERSION_SUFFIX@">0</token>
+  <token name="@PROFILE@">22.01</token>
+  <xml name="version_command">
+     <version_command><![CDATA[rcf -V]]></version_command>
+  </xml>
+  <xml name="xrefs">
+    <xrefs>
+      <xref type='bio.tools'>Bakta</xref>
+    </xrefs>
+  </xml>
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="@TOOL_VERSION@">bakta</requirement>
+    </requirements>
+  </xml>
+  <xml name="citations">
+      <citations>
+        <citation type="bibtex">
+          @article{mbs:/content/journal/mgen/10.1099/mgen.0.000685,
+   author = "Schwengers, Oliver and Jelonek, Lukas and Dieckmann, Marius Alfred and Beyvers, Sebastian and Blom, Jochen and Goesmann, Alexander",
+   title = "Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification",
+   journal= "Microbial Genomics",
+   year = "2021",
+   volume = "7",
+   number = "11",
+   pages = "",
+   doi = "https://doi.org/10.1099/mgen.0.000685",
+   url = "https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000685",
+   publisher = "Microbiology Society",
+   issn = "2057-5858",
+   type = "Journal Article",
+   keywords = "whole-genome sequencing",
+   keywords = "bacteria",
+   keywords = "metagenome-assembled genomes",
+   keywords = "plasmids ",
+   keywords = "genome annotation",
+   eid = "000685",
+   abstract = "Command-line annotation software tools have continuously gained popularity compared to
+   centralized online services due to the worldwide increase of sequenced bacterial genomes.
+   However, results of existing command-line software pipelines heavily depend on taxon-specific
+   databases or sufficiently well annotated reference genomes. Here, we introduce Bakta, a new command-line
+   software tool for the robust, taxon-independent, thorough and, nonetheless, fast annotation of bacterial genomes.
+   Bakta conducts a comprehensive annotation workflow including the detection of small proteins taking into account
+   replicon metadata. The annotation of coding sequences is accelerated via an alignment-free sequence identification
+   approach that in addition facilitates the precise assignment of public database cross-references.
+   Annotation results are exported in GFF3 and International Nucleotide Sequence Database Collaboration (INSDC)-compliant flat files,
+   as well as comprehensive JSON files, facilitating automated downstream analysis.
+   We compared Bakta to other rapid contemporary command-line annotation software tools in both targeted and taxonomically broad benchmarks
+   including isolates and metagenomic-assembled genomes. We demonstrated that Bakta outperforms other tools in terms of functional annotations,
+   the assignment of functional categories and database cross-references, whilst providing comparable wall-clock runtimes.
+   Bakta is implemented in Python 3 and runs on MacOS and Linux systems.
+   It is freely available under a GPLv3 license at https://github.com/oschwengers/bakta.
+   An accompanying web version is available at https://bakta.computational.bio.",
+  }
+        </citation>
+      </citations>
+  </xml>
+</macros>