Mercurial > repos > pimarin > bakta

comparison test-data/tmp/TEST_1.embl @ 3:eea334d9988b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
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2:ca9e2125c5de 3:eea334d9988b
1 ID contig_1; ; circular; DNA; ; PRO; 1330 BP.
2 XX
3 AC contig_1;
4 XX
5 DE plasmid unnamed1, complete sequence
6 XX
7 OS .
8 OC .
9 XX
10 CC Annotated with Bakta
11 CC Software: v1.6.1
12 CC Database: v4.0
13 CC DOI: 10.1099/mgen.0.000685
14 CC URL: github.com/oschwengers/bakta
15 CC
16 CC ##Genome Annotation Summary:##
17 <<<<<<< HEAD:tools/bakta/test-data/tmp/TEST_1.embl
18 <<<<<<< HEAD:tools/bakta/test-data/TEST_1/TEST_1.embl
19 CC Annotation Date :: 12/19/2022, 10:20:25
20 =======
21 <<<<<<< HEAD:tools/bakta/test-data/TEST_4/TEST_4.embl
22 CC Annotation Date :: 09/16/2022, 07:32:50
23 =======
24 CC Annotation Date :: 12/21/2022, 14:34:39
25 >>>>>>> f1bb03fb2 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.embl
26 >>>>>>> 17d4de2b8 (update bakta for plot output and to reduce number of output files):tools/bakta/test-data/tmp/TEST_1.embl
27 =======
28 CC Annotation Date :: 12/21/2022, 19:53:31
29 >>>>>>> 195c8410c (change option for plot):tools/bakta/test-data/TEST_1/TEST_1.embl
30 CC Annotation Pipeline :: Bakta
31 CC Annotation Software version :: v1.6.1
32 CC Annotation Database version :: v4.0
33 CC CDSs :: 2
34 CC tRNAs :: 0
35 CC tmRNAs :: 0
36 CC rRNAs :: 0
37 CC ncRNAs :: 0
38 CC regulatory ncRNAs :: 0
39 CC CRISPR Arrays :: 0
40 CC oriCs/oriVs :: 0
41 CC oriTs :: 0
42 CC gaps :: 0
43 CC pseudogenes :: 0
44 XX
45 FH Key Location/Qualifiers
46 FH
47 FT source 1..1330
48 FT /mol_type="genomic DNA"
49 FT /plasmid="unnamed1"
50 FT gene 413..736
51 FT /locus_tag="IHHALP_00005"
52 FT CDS 413..736
53 FT /product="hypothetical protein"
54 FT /locus_tag="IHHALP_00005"
55 FT /protein_id="gnl|Bakta|IHHALP_00005"
56 FT /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
57 FT AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
58 FT MAD"
59 FT /codon_start=1
60 FT /transl_table=11
61 FT /inference="ab initio prediction:Prodigal:2.6"
62 FT gene complement(join(971..1330,1..141))
63 FT /locus_tag="IHHALP_00010"
64 FT CDS complement(join(971..1330,1..141))
65 FT /product="hypothetical protein"
66 FT /locus_tag="IHHALP_00010"
67 FT /protein_id="gnl|Bakta|IHHALP_00010"
68 FT /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
69 FT EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
70 FT YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
71 FT IPI"
72 FT /codon_start=1
73 FT /transl_table=11
74 FT /inference="ab initio prediction:Prodigal:2.6"
75 XX
76 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
77 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60
78 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120
79 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180
80 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240
81 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300
82 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac 360
83 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa 420
84 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga 480
85 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt 540
86 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga 600
87 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga 660
88 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag 720
89 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt 780
90 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga 840
91 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc 900
92 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc 960
93 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa 1020
94 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080
95 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140
96 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200
97 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260
98 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320
99 cttctatttg 1330
100 //