Mercurial > repos > pimarin > bakta

comparison test-data/TEST_3/TEST_3.embl @ 3:eea334d9988b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
parents ca9e2125c5de
children 8c7499c6f32a
comparison
equal deleted inserted replaced
2:ca9e2125c5de 3:eea334d9988b
1 ID contig_1; ; circular; DNA; ; PRO; 3306 BP. 1 ID contig_1; ; circular; DNA; ; PRO; 1330 BP.
2 XX 2 XX
3 AC contig_1; 3 AC contig_1;
4 XX 4 XX
5 DE plasmid unnamed1, complete sequence 5 DE plasmid unnamed1, complete sequence
6 XX 6 XX
7 OS . 7 OS .
8 OC . 8 OC .
9 XX 9 XX
10 CC Annotated with Bakta 10 CC Annotated with Bakta
11 CC Software: v1.4.2 11 CC Software: v1.6.1
12 CC Database: v3.0 12 CC Database: v4.0
13 CC DOI: 10.1099/mgen.0.000685 13 CC DOI: 10.1099/mgen.0.000685
14 CC URL: github.com/oschwengers/bakta 14 CC URL: github.com/oschwengers/bakta
15 CC 15 CC
16 CC ##Genome Annotation Summary:## 16 CC ##Genome Annotation Summary:##
17 CC Annotation Date :: 08/17/2022, 09:35:50 17 CC Annotation Date :: 12/19/2022, 10:21:03
18 CC Annotation Pipeline :: Bakta 18 CC Annotation Pipeline :: Bakta
19 CC Annotation Software version :: v1.4.2 19 CC Annotation Software version :: v1.6.1
20 CC Annotation Database version :: v3.0 20 CC Annotation Database version :: v4.0
21 CC CDSs :: 0 21 CC CDSs :: 0
22 CC tRNAs :: 0 22 CC tRNAs :: 0
23 CC tmRNAs :: 0 23 CC tmRNAs :: 0
24 CC rRNAs :: 0 24 CC rRNAs :: 0
25 CC ncRNAs :: 0 25 CC ncRNAs :: 0
26 CC regulatory ncRNAs :: 0 26 CC regulatory ncRNAs :: 0
27 CC CRISPR Arrays :: 0 27 CC CRISPR Arrays :: 0
28 CC oriCs/oriVs :: 0 28 CC oriCs/oriVs :: 0
29 CC oriTs :: 0 29 CC oriTs :: 0
30 CC gaps :: 0 30 CC gaps :: 0
31 CC pseudogenes :: 0
31 XX 32 XX
32 FH Key Location/Qualifiers 33 FH Key Location/Qualifiers
33 FH 34 FH
34 FT source 1..3306 35 FT source 1..1330
35 FT /mol_type="genomic DNA" 36 FT /mol_type="genomic DNA"
36 FT /plasmid="unnamed1" 37 FT /plasmid="unnamed1"
37 XX 38 XX
38 SQ Sequence 3306 BP; 797 A; 692 C; 743 G; 1074 T; 0 other; 39 SQ Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
39 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60 40 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 60
40 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120 41 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 120
41 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180 42 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 180
42 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240 43 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt 240
43 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300 44 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt 300
56 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080 57 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 1080
57 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140 58 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 1140
58 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200 59 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 1200
59 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260 60 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 1260
60 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320 61 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 1320
61 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 1380 62 cttctatttg 1330
62 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc 1440
63 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca 1500
64 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat 1560
65 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca 1620
66 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta 1680
67 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg 1740
68 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga 1800
69 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc 1860
70 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt 1920
71 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct 1980
72 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt 2040
73 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg 2100
74 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc 2160
75 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc 2220
76 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc 2280
77 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc 2340
78 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg 2400
79 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga 2460
80 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt 2520
81 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga 2580
82 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca 2640
83 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg 2700
84 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc 2760
85 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga 2820
86 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg 2880
87 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta 2940
88 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg 3000
89 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg 3060
90 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg 3120
91 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg 3180
92 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc 3240
93 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt 3300
94 ctggag 3306
95 // 63 //