Mercurial > repos > pimarin > bakta

comparison test-data/TEST_2/TEST_2.gbff @ 3:eea334d9988b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 73af464cc860250c3fa3dd433602283ab5a44f53-dirty
author pimarin
date Thu, 22 Dec 2022 15:01:43 +0000
parents ca9e2125c5de
children 8c7499c6f32a
comparison
equal deleted inserted replaced
2:ca9e2125c5de 3:eea334d9988b
1 LOCUS NC_002127.1 3306 bp DNA circular BCT 17-AUG-2022 1 LOCUS NC_002127.1 1330 bp DNA circular BCT 19-DEC-2022
2 DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence. 2 DEFINITION Escherichia coli o157:h7 Sakai plasmid pOSAK1, complete sequence.
3 ACCESSION NC_002127 3 ACCESSION NC_002127
4 VERSION NC_002127.1 4 VERSION NC_002127.1
5 KEYWORDS . 5 KEYWORDS .
6 SOURCE Escherichia coli o157:h7 Sakai 6 SOURCE Escherichia coli o157:h7 Sakai
7 ORGANISM Escherichia coli o157:h7 Sakai 7 ORGANISM Escherichia coli o157:h7 Sakai
8 . 8 .
9 COMMENT Annotated with Bakta 9 COMMENT Annotated with Bakta
10 Software: v1.4.2 10 Software: v1.6.1
11 Database: v3.0 11 Database: v4.0
12 DOI: 10.1099/mgen.0.000685 12 DOI: 10.1099/mgen.0.000685
13 URL: github.com/oschwengers/bakta 13 URL: github.com/oschwengers/bakta
14 14
15 ##Genome Annotation Summary:## 15 ##Genome Annotation Summary:##
16 Annotation Date :: 08/17/2022, 09:35:38 16 Annotation Date :: 12/19/2022, 10:20:45
17 Annotation Pipeline :: Bakta 17 Annotation Pipeline :: Bakta
18 Annotation Software version :: v1.4.2 18 Annotation Software version :: v1.6.1
19 Annotation Database version :: v3.0 19 Annotation Database version :: v4.0
20 CDSs :: 3 20 CDSs :: 2
21 tRNAs :: 0 21 tRNAs :: 0
22 tmRNAs :: 0 22 tmRNAs :: 0
23 rRNAs :: 0 23 rRNAs :: 0
24 ncRNAs :: 0 24 ncRNAs :: 0
25 regulatory ncRNAs :: 0 25 regulatory ncRNAs :: 0
26 CRISPR Arrays :: 0 26 CRISPR Arrays :: 0
27 oriCs/oriVs :: 0 27 oriCs/oriVs :: 0
28 oriTs :: 0 28 oriTs :: 0
29 gaps :: 0 29 gaps :: 0
30 pseudogenes :: 0
30 FEATURES Location/Qualifiers 31 FEATURES Location/Qualifiers
31 source 1..3306 32 source 1..1330
32 /mol_type="genomic DNA" 33 /mol_type="genomic DNA"
33 /organism="Escherichia coli o157:h7 Sakai" 34 /organism="Escherichia coli o157:h7 Sakai"
34 /strain="Sakai" 35 /strain="Sakai"
35 /plasmid="pOSAK1" 36 /plasmid="pOSAK1"
36 gene <2..736 37 gene 413..736
37 /locus_tag="DOGAIA_00005" 38 /locus_tag="IHHALP_00005"
38 CDS <2..736 39 CDS 413..736
39 /product="hypothetical protein" 40 /product="hypothetical protein"
40 /locus_tag="DOGAIA_00005" 41 /locus_tag="IHHALP_00005"
41 /translation="SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCL 42 /protein_id="gnl|Bakta|IHHALP_00005"
42 FIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQ 43 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
43 DVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQ 44 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
44 EIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDRE 45 MAD"
45 YAEVLIAITEYHRALLSRLMAD"
46 /codon_start=1 46 /codon_start=1
47 /transl_table=11 47 /transl_table=11
48 /protein_id="gnl|Bakta|DOGAIA_00005"
49 /inference="ab initio prediction:Prodigal:2.6" 48 /inference="ab initio prediction:Prodigal:2.6"
50 gene complement(971..1351) 49 gene complement(join(971..1330,1..141))
51 /locus_tag="DOGAIA_00010" 50 /locus_tag="IHHALP_00010"
52 CDS complement(971..1351) 51 CDS complement(join(971..1330,1..141))
53 /product="hypothetical protein" 52 /product="hypothetical protein"
54 /locus_tag="DOGAIA_00010" 53 /locus_tag="IHHALP_00010"
55 /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK 54 /protein_id="gnl|Bakta|IHHALP_00010"
56 SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF 55 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
57 DKINVNLLSKATSFALKKGIPI" 56 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
57 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
58 IPI"
58 /codon_start=1 59 /codon_start=1
59 /transl_table=11 60 /transl_table=11
60 /protein_id="gnl|Bakta|DOGAIA_00010"
61 /inference="ab initio prediction:Prodigal:2.6"
62 gene complement(1348..2388)
63 /locus_tag="DOGAIA_00015"
64 CDS complement(1348..2388)
65 /product="hypothetical protein"
66 /locus_tag="DOGAIA_00015"
67 /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
68 GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
69 ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
70 LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
71 IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
72 HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
73 VARLKL"
74 /codon_start=1
75 /transl_table=11
76 /protein_id="gnl|Bakta|DOGAIA_00015"
77 /inference="ab initio prediction:Prodigal:2.6" 61 /inference="ab initio prediction:Prodigal:2.6"
78 ORIGIN 62 ORIGIN
79 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc 63 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
80 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc 64 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
81 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg 65 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
96 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat 80 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
97 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat 81 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
98 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa 82 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
99 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc 83 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
100 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg 84 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
101 1321 cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat 85 1321 cttctatttg
102 1381 taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc
103 1441 agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca
104 1501 ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat
105 1561 atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca
106 1621 aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta
107 1681 tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg
108 1741 ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga
109 1801 ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc
110 1861 tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt
111 1921 tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct
112 1981 ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt
113 2041 tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg
114 2101 aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc
115 2161 gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc
116 2221 tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc
117 2281 tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc
118 2341 aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg
119 2401 ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga
120 2461 cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt
121 2521 ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga
122 2581 gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca
123 2641 aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg
124 2701 gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc
125 2761 gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga
126 2821 gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg
127 2881 cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta
128 2941 tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg
129 3001 ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg
130 3061 ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg
131 3121 agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg
132 3181 aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc
133 3241 ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt
134 3301 ctggag
135 // 86 //