Mercurial > repos > pimarin > amrfinderplus_data_manager_build
comparison data_manager/data_manager_build_amrfinderplus.xml @ 0:02a159f061a1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_amrfinderplus commit 25a0413337c540dc9f26bc7ee097d493f0d148ca-dirty
| author | pimarin |
|---|---|
| date | Mon, 14 Nov 2022 15:05:09 +0000 |
| parents | |
| children | 7c2a5aeb5ee4 |
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| -1:000000000000 | 0:02a159f061a1 |
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| 1 <tool id="data_manager_build_amrfinderplus" name="amrfinderplus_datamanager" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> | |
| 2 <description>AMRfinderplus database builder</description> | |
| 3 <macros> | |
| 4 <import>macro.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"/> | |
| 7 <command detect_errors="exit_code"> | |
| 8 <![CDATA[ | |
| 9 python '$__tool_directory__/data_manager_build_amrfinderplus.py' | |
| 10 '$output_file' | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="database_select" type="select" label="Database version"> | |
| 14 <option value="latest" selected="true">Latest available version</option> | |
| 15 </param> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="output_file" format="data_manager_json"/> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <!-- Test download --> | |
| 22 <test expect_num_outputs="1"> | |
| 23 <output name="output_file" value="amrfinderplus_test_data_manager.json" /> | |
| 24 </test> | |
| 25 </tests> | |
| 26 <help><![CDATA[ | |
| 27 Download the latest version of amrfinderplus database from the NCBI | |
| 28 ]]></help> | |
| 29 <citations> | |
| 30 <citation type="doi">10.1038/s41598-021-91456-0</citation> | |
| 31 </citations> | |
| 32 </tool> |