Mercurial > repos > pimarin > abromicsextractor
view test-data/staramr/detailed_summary.tsv @ 0:a157d29ef11d draft default tip
planemo upload commit 4b30072ce6fff8554976af6fb4fce92069d39a6e
| author | pimarin |
|---|---|
| date | Mon, 15 May 2023 14:20:18 +0000 |
| parents | |
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Isolate ID Data Data Type Predicted Phenotype %Identity %Overlap HSP Length/Total Length Contig Start End Accession 10_Enterococcus_faecalis_S17_L001 ST768 (efaecalis) MLST 10_Enterococcus_faecalis_S17_L001 rep7a Plasmid 100.0 100.0 939/939 contig00048 3276 4214 X92945 10_Enterococcus_faecalis_S17_L001 rep9b Plasmid 100.0 100.0 1014/1014 contig00023 3630 4643 CP002494 10_Enterococcus_faecalis_S17_L001 repUS12 Plasmid 99.75 99.62 792/795 contig00051 918 127 AF181950 10_Enterococcus_faecalis_S17_L001 repUS40 Plasmid 100.0 100.0 1158/1158 contig00026 21156 22313 KP399637 10_Enterococcus_faecalis_S17_L001 repUS43 Plasmid 100.0 100.0 1206/1206 contig00040 9430 8225 CP003584 10_Enterococcus_faecalis_S17_L001 ant(6)-Ia Resistance streptomycin 100.0 100.0 909/909 contig00046 4769 3861 AF330699 10_Enterococcus_faecalis_S17_L001 aph(3')-III Resistance kanamycin, amikacin 100.0 100.0 795/795 contig00046 3229 2435 M26832 10_Enterococcus_faecalis_S17_L001 cat(pC221) Resistance chloramphenicol 97.68 100.0 648/648 contig00048 4344 4991 X02529 10_Enterococcus_faecalis_S17_L001 dfrG Resistance trimethoprim 100.0 100.0 498/498 contig00049 275 772 AB205645 10_Enterococcus_faecalis_S17_L001 erm(B) Resistance erythromycin, azithromycin 99.21 100.13 763/762 contig00048 961 199 X66468 10_Enterococcus_faecalis_S17_L001 fexA Resistance chloramphenicol 99.65 100.0 1428/1428 contig00026 4466 5893 AJ549214 10_Enterococcus_faecalis_S17_L001 lsa(A) Resistance lincomycin 100.0 100.0 1497/1497 contig00004 148769 147273 AY737526 10_Enterococcus_faecalis_S17_L001 optrA Resistance linezolid, chloramphenicol 100.0 100.0 1968/1968 contig00026 6581 8548 KP399637 10_Enterococcus_faecalis_S17_L001 tet(L) Resistance tetracycline 100.0 100.0 1377/1377 contig00050 282 1658 M29725 10_Enterococcus_faecalis_S17_L001 tet(M) Resistance tetracycline 98.12 100.0 1920/1920 contig00047 5912 3993 X90939